View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10834_high_2 (Length: 275)
Name: NF10834_high_2
Description: NF10834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10834_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 24511582 - 24511831
Alignment:
| Q |
15 |
ggctataataaaggaaataagtcgtattgtactgcaatactacaagtcaaacaaacnnnnnnngtggtattgtactgcactatgnnnnnnnn----aatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| |
|
|
| T |
24511582 |
ggctataataaaggaaataagtcgtattgtactgcaatactacaagtcaaacaaacaaaaaaagtcgtattgtactgcactatgttttttttttttaatt |
24511681 |
T |
|
| Q |
111 |
atgaatgaatannnnnnnaattatgaataaat-gggcttaaactctaaccacaagaacaataagcaaaagactaaa-acttataggaagtaaaagagttc |
208 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
24511682 |
atgaataaatatttttttaattatgaataaatagggcttaaactctaacca--agaacaataagcaaaagactaaatacttataggaagtgaaagagttc |
24511779 |
T |
|
| Q |
209 |
ctatcggtcatctagaaaaacaaaactacaactaagatgtatcccattaaat |
260 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24511780 |
ctatcggtcaacaagggaaacaaaactacaactaagatgtatcccactaaat |
24511831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University