View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10834_high_3 (Length: 255)

Name: NF10834_high_3
Description: NF10834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10834_high_3
NF10834_high_3
[»] chr4 (8 HSPs)
chr4 (57-255)||(36369476-36369673)
chr4 (12-133)||(36417528-36417649)
chr4 (12-130)||(36426356-36426474)
chr4 (12-133)||(36397940-36398061)
chr4 (12-125)||(36412197-36412310)
chr4 (16-133)||(36388165-36388282)
chr4 (31-129)||(36404894-36404992)
chr4 (10-171)||(36374203-36374368)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 57 - 255
Target Start/End: Original strand, 36369476 - 36369673
Alignment:
Q  57 agtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtgggaggaaaaaagaaagggtatgtgatatttagggatgacatcccttgtt 156  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36369476 agtttctatagtt-caattgtcctcctcctttcatgtatgtattgcatgtgggaggaaaaaagaaagggtatgtgatatttagggatgacatcccttgtt 36369574  T
Q  157 ctttatatttcattannnnnnngcagtctgttatgcaaaatgtgtcctattagtttcaaaatttataatcgaagattttttgagagctaaatggaaatt 255  Q
    | ||||| |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36369575 ccttataattcattatttttttgcagtctgttatgcaaaatgtgtcctattagtttcaaaatttataatcgaagattttttgagagctaaatggaaatt 36369673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 36417528 - 36417649
Alignment:
Q  12 aagcaaaggaatccttggtaaaaagaggttagctgcggttctggtagtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtgggag 111  Q
    |||||||||| |||||| ||||||||||||||||||  |||| |||| ||||||||||||||||||| ||||||| |  ||| || ||| ||||||| ||    
T  36417528 aagcaaaggagtccttgataaaaagaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctcctcttctgtgtgaattacatgtggaag 36417627  T
Q  112 gaaaaaagaaagggtatgtgat 133  Q
     |||| ||||||||||||||||    
T  36417628 aaaaagagaaagggtatgtgat 36417649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 36426356 - 36426474
Alignment:
Q  12 aagcaaaggaatccttggtaaaaagaggttagctgcggttctggtagtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtgggag 111  Q
    |||||||||| ||||||| |||||||||||||||||  |||| |||| ||||||||||||||||||| ||||||| |  ||| || ||| ||||||| ||    
T  36426356 aagcaaaggagtccttggcaaaaagaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctcctcttctgtgtgaattacatgtggaag 36426455  T
Q  112 gaaaaaagaaagggtatgt 130  Q
     |||| |||||||||||||    
T  36426456 aaaaagagaaagggtatgt 36426474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 36397940 - 36398061
Alignment:
Q  12 aagcaaaggaatccttggtaaaaagaggttagctgcggttctggtagtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtgggag 111  Q
    |||||||||| |||||| |||||||||||| ||||   || |||||||||| ||||||||||| ||| | ||||| || ||| || ||| ||||||| ||    
T  36397940 aagcaaaggagtccttgataaaaagaggttggctgtaattatggtagtttcaatagttgcaatcgtcattctcctctcttgtgtgaattacatgtggaag 36398039  T
Q  112 gaaaaaagaaagggtatgtgat 133  Q
     |||||||||||||||||||||    
T  36398040 aaaaaaagaaagggtatgtgat 36398061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 36412197 - 36412310
Alignment:
Q  12 aagcaaaggaatccttggtaaaaagaggttagctgcggttctggtagtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtgggag 111  Q
    |||||||||| |||||| ||||||||||||||||||  |||| |||| ||||||||||||||||||| ||||||| |  ||| || ||| ||||||| ||    
T  36412197 aagcaaaggagtccttgataaaaagaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctcctcttctgtgtgaattacatgtggaag 36412296  T
Q  112 gaaaaaagaaaggg 125  Q
     |||| ||||||||    
T  36412297 aaaaagagaaaggg 36412310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 36388165 - 36388282
Alignment:
Q  16 aaaggaatccttggtaaaaagaggttagctgcggttctggtagtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtgggaggaaa 115  Q
    |||||| | |||| |||||||||||| |||||  |||| |||| ||||||| ||||||||||||||||||| || ||| || | | ||||||| || |||    
T  36388165 aaaggagttcttgataaaaagaggttggctgcaattcttgtagcttctataattgcaattgtcctcctcctctcctgtgtgaactacatgtggaagaaaa 36388264  T
Q  116 aaagaaagggtatgtgat 133  Q
    ||||  ||||||||||||    
T  36388265 aaagggagggtatgtgat 36388282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 36404894 - 36404992
Alignment:
Q  31 aaaaagaggttagctgcggttctggtagtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtgggaggaaaaaagaaagggtatg 129  Q
    ||||||||||| |||||  ||||||||| |||||| |||||||||||| ||||||| || ||| |  ||| ||||||| || |||||| ||||||||||    
T  36404894 aaaaagaggttggctgcaattctggtagcttctattgttgcaattgtcatcctcctctcctgtgtaaattacatgtggaagaaaaaaacaaagggtatg 36404992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 36374203 - 36374368
Alignment:
Q  10 agaagcaaaggaatccttggtaaaaagaggttagctgcggttctggtagtttctatagttgcaattgtcctcctcctttcatgtatgtattgcatgtggg 109  Q
    |||||||||||| |||| ||| |||||||| |  ||||  ||||||| | ||||| |||||| |||||||||||||| || | | ||| ||||| ||||     
T  36374203 agaagcaaaggagtcctaggtcaaaagaggatttctgcaattctggttgcttctacagttgcgattgtcctcctcctctcctttgtgttttgcaggtgga 36374302  T
Q  110 aggaaaaaagaaagggtatgtgat----atttagggatgacatcccttgttctttatatttcatta 171  Q
    || ||| |||||| ||||||||||     |||| |||| | ||||  |||||||||||||||||||    
T  36374303 agaaaacaagaaacggtatgtgattcaattttaaggataatatcctctgttctttatatttcatta 36374368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University