View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10834_high_5 (Length: 229)
Name: NF10834_high_5
Description: NF10834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10834_high_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 25671501 - 25671273
Alignment:
| Q |
1 |
gcatggcaaatgacagcagcaacactagttggtttacaaagcatgccaggactagtaattctctatgcaagcatagtgaaaaagaaatgggcagtgaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25671501 |
gcatggcaaatgacagcagcaacactagttggtttacaaagcatgccaggactagtaattctctatgcaagcatagtgaaaaagaaatgggcagtgaatt |
25671402 |
T |
|
| Q |
101 |
cagctttcatggcactatatgcttttgcagcagttttaatctgttgggttcttgttgcttatagaatggcttttggtgacgaacttttaccgttctgggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
25671401 |
cagctttcatggcactatatgcttttgcagcagtattaatctgttgggttcttgttgcttatagaatggcttttggtgatgaacttttacctttctgggg |
25671302 |
T |
|
| Q |
201 |
taaaggtgcaccggctttaggacaaaaat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25671301 |
taaaggtgcaccggctttaggacaaaaat |
25671273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 5625708 - 5625481
Alignment:
| Q |
2 |
catggcaaatgacagcagcaacactagttggtttacaaagcatgccaggactagtaattctctatgcaagcatagtgaaaaagaaatgggcagtgaattc |
101 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||||||||||||||| || ||||||||||||||||| || || |||||||||||||| ||||||| |
|
|
| T |
5625708 |
catggcaaatgacagcatcaaccctagttggtctacaaagcatgccaggtcttgtaattctctatgcaagtatggtcaaaaagaaatgggctatgaattc |
5625609 |
T |
|
| Q |
102 |
agctttcatggcactatatgcttttgcagcagttttaatctgttgggttcttgttgcttatagaatggcttttggtgacgaacttttaccgttctggggt |
201 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||| |||| |||||||||||| | ||| | |||||||||||||| |||||||| || || |||||| |
|
|
| T |
5625608 |
agctttcatggcactttatgcttatgcatcagtgctaatatgttgggttcttttatgttaccgtatggcttttggtgatgaactttttccattttggggt |
5625509 |
T |
|
| Q |
202 |
aaaggtgcaccggctttaggacaaaaat |
229 |
Q |
| |
|
||||||||||| | ||||| ||||||| |
|
|
| T |
5625508 |
aaaggtgcaccttcattaggtcaaaaat |
5625481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 150
Target Start/End: Complemental strand, 39726961 - 39726813
Alignment:
| Q |
2 |
catggcaaatgacagcagcaacactagttggtttacaaagcatgccaggactagtaattctctatgcaagcatagtgaaaaagaaatgggcagtgaattc |
101 |
Q |
| |
|
|||||||||||| | |||| || || ||||| | |||||||||||||||||||| || ||||||| ||||||||||||||||||||||| || || || |
|
|
| T |
39726961 |
catggcaaatgatatcagctacccttgttggaattcaaagcatgccaggactagttatcctctatggcagcatagtgaaaaagaaatgggctgtaaactc |
39726862 |
T |
|
| Q |
102 |
agctttcatggcactatatgcttttgcagcagttttaatctgttgggtt |
150 |
Q |
| |
|
||||||||||| || || ||||| || || ||| |||||||||||||| |
|
|
| T |
39726861 |
tgctttcatggctctctacgctttcgcggcggttataatctgttgggtt |
39726813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 13350291 - 13350166
Alignment:
| Q |
79 |
aaaaagaaatgggcagtgaattcagctttcatggcactatatgcttttgcagcagttttaatctgttgggttcttgttgcttatagaatggcttttggtg |
178 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||| ||||| |||||| || || ||||||||||| || |||||||||||| | ||||||| |
|
|
| T |
13350291 |
aaaaagaaatgggcagtgaattcagcattcatgtcactctatgcatttgcatgtgtatttttctgttgggttttttgggcttatagaatgtcatttggtg |
13350192 |
T |
|
| Q |
179 |
acgaacttttaccgttctggggtaaa |
204 |
Q |
| |
|
| |||||| || || ||||||||| |
|
|
| T |
13350191 |
atacactttttccattttggggtaaa |
13350166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University