View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10834_high_6 (Length: 227)

Name: NF10834_high_6
Description: NF10834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10834_high_6
NF10834_high_6
[»] chr8 (1 HSPs)
chr8 (4-227)||(34230133-34230356)
[»] chr5 (2 HSPs)
chr5 (1-173)||(1279738-1279917)
chr5 (73-136)||(191959-192021)
[»] chr2 (2 HSPs)
chr2 (1-130)||(19952460-19952591)
chr2 (110-163)||(18426150-18426203)
[»] chr3 (3 HSPs)
chr3 (71-168)||(43135167-43135264)
chr3 (71-130)||(37382970-37383029)
chr3 (1-42)||(43136016-43136057)
[»] chr7 (3 HSPs)
chr7 (71-166)||(14088688-14088783)
chr7 (71-166)||(14398706-14398801)
chr7 (112-175)||(25491775-25491838)
[»] scaffold0092 (1 HSPs)
scaffold0092 (70-164)||(46395-46489)
[»] chr1 (1 HSPs)
chr1 (71-124)||(26273628-26273681)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 34230133 - 34230356
Alignment:
Q  4 gcagggagctgaagaagaagaaagtgtttctgctgtacgcacgtgtgagaaattttaaaattttccattttttaagtgggtcaatgggctataaggttgg 103  Q
    |||||||||||||||||||||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||    
T  34230133 gcagggagctgaagaagaagaaagtgtttctgttgtacacatatgtgagaaattttaaaattttccattttttaaatgggtcagtgggctattaggttgg 34230232  T
Q  104 gtcatatataaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtggaaccacccatgattccaactaggtcagcacccctagaac 203  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34230233 gtcatatataaagaaagtatcaattgagcccgggcgaatgttcgaggtcgccaggtggtggaaccacccatgattccaactaggtcagcacccctaaaac 34230332  T
Q  204 cacaaatctcttacaagtatactc 227  Q
    ||||||||||||||||||||||||    
T  34230333 cacaaatctcttacaagtatactc 34230356  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 1279917 - 1279738
Alignment:
Q  1 gaggcagggagctgaagaagaagaaagtgtttctgctgtacgcacgtgtgagaaattttaaaattttcc--atttttt-----aagtgggtcaatgggct 93  Q
    ||||||| ||||||||||||||||| |||||| || ||| ||| | |||||||||||| | ||||| ||  |||||||     | |||||| ||||||||    
T  1279917 gaggcagagagctgaagaagaagaatgtgtttatgttgtgcgcgcatgtgagaaatttcagaatttgcccaattttttttgttaggtgggttaatgggct 1279818  T
Q  94 ataaggttgggtcatatataaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtggaaccaccca 173  Q
    ||   |||||||||||||||||||||||||| |||||  |||| | |||||  ||||||||  |||||||||||| ||||    
T  1279817 attgagttgggtcatatataaagaaagtatcgattgagtccgggcaaatgtctgaggtcgctgggtggtggaaccgccca 1279738  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 192021 - 191959
Alignment:
Q  73 ttttaagtgggtcaatgggctataaggttgggtcatatataaagaaagtatcaattgaacccgg 136  Q
    |||||||||||| ||||||||||  ||||| ||||||||||||||||||| | |||||||||||    
T  192021 ttttaagtgggttaatgggctatt-ggttgtgtcatatataaagaaagtaccgattgaacccgg 191959  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 19952460 - 19952591
Alignment:
Q  1 gaggcagggagctgaagaagaagaaagtgtttctgctgtacgcacgtgtgagaaattttaaaattttcc----attttttaagtgggtcaatgggctata 96  Q
    ||||||| ||| ||||||||||||| ||||||||| |||  || |||||||||||||||| ||||| ||     |||||||| ||||| ||||||||||     
T  19952460 gaggcagagagttgaagaagaagaacgtgtttctgttgt--gcgcgtgtgagaaattttagaatttgcctaattttttttaattgggttaatgggctatt 19952557  T
Q  97 aggttgggtcatatataaagaaagtatcaattga 130  Q
      | ||||||||||||||||||| |||| |||||    
T  19952558 gaggtgggtcatatataaagaaaatatcgattga 19952591  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 18426150 - 18426203
Alignment:
Q  110 tataaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtg 163  Q
    ||||||||||||||| ||||| ||||||| ||||| || ||| |||||||||||    
T  18426150 tataaagaaagtatcgattgagcccggacaaatgtccggggtagccaggtggtg 18426203  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 43135264 - 43135167
Alignment:
Q  71 ttttttaagtgggtcaatgggctataaggttgggtcatatataaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtggaacc 168  Q
    |||||||||||||| ||||| ||||    ||||| ||||||||||||||||||| ||||| |  |||||||||| |  ||||||||| ||||||||||    
T  43135264 ttttttaagtgggttaatggactattgcattgggccatatataaagaaagtatcgattgagcttggacgaatgtccagggtcgccagatggtggaacc 43135167  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 37382970 - 37383029
Alignment:
Q  71 ttttttaagtgggtcaatgggctataaggttgggtcatatataaagaaagtatcaattga 130  Q
    |||||||||||||| ||||||||||  ||||||  |||||||| |||||||||| |||||    
T  37382970 ttttttaagtgggttaatgggctattgggttggaccatatatacagaaagtatcgattga 37383029  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43136057 - 43136016
Alignment:
Q  1 gaggcagggagctgaagaagaagaaagtgtttctgctgtacg 42  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||    
T  43136057 gaggcagagagctgaagaagaagaatgtgtttctgttgtacg 43136016  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 14088783 - 14088688
Alignment:
Q  71 ttttttaagtgggtcaatgggctataaggttgggtcatatataaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtggaa 166  Q
    |||||| ||||||| |||||||||   ||||| | ||||||||||||||||||| ||||| ||||| | | ||  || ||||||| ||||||||||    
T  14088783 ttttttgagtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtggaa 14088688  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 14398801 - 14398706
Alignment:
Q  71 ttttttaagtgggtcaatgggctataaggttgggtcatatataaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtggaa 166  Q
    |||||| ||||||| |||||||||   ||||| | ||||||||||||||||||| ||||| ||||| | | ||  || ||||||| ||||||||||    
T  14398801 ttttttgagtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtggaa 14398706  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 25491775 - 25491838
Alignment:
Q  112 taaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtggaaccacccatg 175  Q
    ||||||||||||| |||||  |||| ||| |||  ||||||||| |||||||||||||||||||    
T  25491775 taaagaaagtatcgattgagtccgggcgagtgtctgaggtcgccgggtggtggaaccacccatg 25491838  T

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Target: scaffold0092 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 46395 - 46489
Alignment:
Q  70 attttttaagtgggtcaatgggctataaggttgggtcatatataaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtgg 164  Q
    ||||||||||||||| ||||  ||||  |||||||  | |||||||||||||||| ||||| ||||| | ||||  || |||| |||||||||||    
T  46395 attttttaagtgggttaatgaactatttggttgggcaaaatataaagaaagtatcgattgagcccgggcaaatgcccggggtcaccaggtggtgg 46489  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 26273628 - 26273681
Alignment:
Q  71 ttttttaagtgggtcaatgggctataaggttgggtcatatataaagaaagtatc 124  Q
    |||||||||| ||| ||| ||||||  ||||||| |||||||||||||||||||    
T  26273628 ttttttaagttggttaattggctattgggttgggccatatataaagaaagtatc 26273681  T

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