View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10834_low_10 (Length: 240)
Name: NF10834_low_10
Description: NF10834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10834_low_10 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 35299009 - 35298785
Alignment:
| Q |
17 |
aggacctccattaggatctgcattggttaggaagcttgaattctttgggacaagtttgtttctaccaatatttatgacttgttgtgtgatgaaggcatat |
116 |
Q |
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| T |
35299009 |
aggacctccattaggatctgcattggttaggaagcttgaattctttgggacaagtttgcttctgccaatatttatgacttgttgtgtgatgaaggcagat |
35298910 |
T |
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| Q |
117 |
ttgagtttgccatatacattaaaggcagctattgattttggt-gcttcatttggtttacacacattgtcaaagtaatagcaatccttataccttccctcg |
215 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35298909 |
tttactttgccatatacattaaaggcagctattgattttggtggcatcatttggtttacacacactgtcaaagtaatagcaatccttataccttccctca |
35298810 |
T |
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| Q |
216 |
tttgcaaaatctccttcaaagatgc |
240 |
Q |
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| T |
35298809 |
tttgcaaaatccccttcaaagatgc |
35298785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 5622711 - 5622934
Alignment:
| Q |
18 |
ggacctccattaggatctgcattggttaggaagcttgaattctttgggacaagtttgtttctaccaatatttatgacttgttgtgtgatgaaggcatatt |
117 |
Q |
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| T |
5622711 |
ggacctccattaggatctgcattagttaggaagcttgaattctttgggacaagtttgttgctgccaatatttatgacttgttgtgtgatgaaggcagatt |
5622810 |
T |
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| Q |
118 |
tgagtttgccatatacattaaaggcagctattgattttggt-gcttcatttggtttacacacattgtcaaagtaatagcaatccttataccttccctcgt |
216 |
Q |
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| T |
5622811 |
tgtctttgccatatacattaaatgcatctattggttttggtatcatcatttgctttacacacattgtcaaagtaatagcataccttatatcttgcctcat |
5622910 |
T |
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| Q |
217 |
ttgcaaaatctccttcaaagatgc |
240 |
Q |
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| T |
5622911 |
ttgcaaaatccccttcaaagatgc |
5622934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 38382663 - 38382627
Alignment:
| Q |
17 |
aggacctccattaggatctgcattggttaggaagctt |
53 |
Q |
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| T |
38382663 |
aggacctcctttaggatctgcattggttaagaagctt |
38382627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 38391521 - 38391485
Alignment:
| Q |
17 |
aggacctccattaggatctgcattggttaggaagctt |
53 |
Q |
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| T |
38391521 |
aggacctcctttaggatctgcattggttaagaagctt |
38391485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 38400110 - 38400058
Alignment:
| Q |
17 |
aggacctccattaggatctgcattggttaggaagcttgaattctttgggacaa |
69 |
Q |
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| T |
38400110 |
aggacctcctctaggatctgcattggttaagaagcttcagttctttggtacaa |
38400058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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