View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10834_low_12 (Length: 236)

Name: NF10834_low_12
Description: NF10834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10834_low_12
NF10834_low_12
[»] chr7 (30 HSPs)
chr7 (1-222)||(10494706-10494927)
chr7 (7-222)||(8667034-8667249)
chr7 (1-222)||(8654065-8654286)
chr7 (4-222)||(8658978-8659196)
chr7 (4-222)||(1301076-1301293)
chr7 (130-222)||(13333829-13333921)
chr7 (43-209)||(29582215-29582381)
chr7 (40-227)||(17259851-17260038)
chr7 (41-227)||(17267549-17267735)
chr7 (44-222)||(6789127-6789305)
chr7 (43-227)||(27831249-27831433)
chr7 (43-183)||(8590292-8590432)
chr7 (44-209)||(29578047-29578212)
chr7 (43-183)||(7878107-7878247)
chr7 (106-222)||(8545248-8545364)
chr7 (43-219)||(8581318-8581494)
chr7 (43-183)||(8616335-8616475)
chr7 (43-222)||(8537651-8537830)
chr7 (107-222)||(8575941-8576056)
chr7 (43-198)||(8609556-8609711)
chr7 (136-222)||(3146879-3146965)
chr7 (43-181)||(8569967-8570105)
chr7 (44-193)||(8102311-8102460)
chr7 (136-227)||(27846573-27846664)
chr7 (106-222)||(8646492-8646608)
chr7 (145-193)||(39985290-39985338)
chr7 (134-193)||(8017878-8017937)
chr7 (16-222)||(8586053-8586259)
chr7 (1-39)||(13333788-13333826)
chr7 (179-222)||(8671608-8671651)
[»] chr4 (6 HSPs)
chr4 (7-222)||(9336229-9336444)
chr4 (43-222)||(30774867-30775046)
chr4 (43-198)||(35132095-35132250)
chr4 (41-191)||(23596957-23597107)
chr4 (136-193)||(23588200-23588257)
chr4 (134-191)||(54396069-54396126)
[»] chr2 (9 HSPs)
chr2 (36-212)||(16657884-16658060)
chr2 (44-222)||(16662367-16662545)
chr2 (106-222)||(43625027-43625143)
chr2 (43-222)||(12245780-12245959)
chr2 (43-222)||(14703023-14703202)
chr2 (43-222)||(11999023-11999201)
chr2 (145-206)||(7541857-7541918)
chr2 (70-178)||(12234349-12234456)
chr2 (43-196)||(12258955-12259108)
[»] chr1 (4 HSPs)
chr1 (38-215)||(4678926-4679103)
chr1 (44-224)||(15594647-15594827)
chr1 (55-222)||(34467174-34467341)
chr1 (145-222)||(52549422-52549499)
[»] chr8 (2 HSPs)
chr8 (43-215)||(12528126-12528298)
chr8 (44-203)||(43744450-43744609)
[»] chr5 (1 HSPs)
chr5 (139-222)||(28219533-28219616)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10494706 - 10494927
Alignment:
Q  1 gacagttgtctcagggattcaaagatatacaagaatgatattgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10494706 gacagttgtctcagggattcaaagatatacaagaatgatattgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgc 10494805  T
Q  101 tagaatttttcaaggggaaggaattattcatgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10494806 tagaatttttcaaggggaaggaattattcatgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctt 10494905  T
Q  201 taagaatgtcccgaacttggtg 222  Q
    ||||||||||||||||||||||    
T  10494906 taagaatgtcccgaacttggtg 10494927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 8667249 - 8667034
Alignment:
Q  7 tgtctcagggattcaaagatatacaagaatgatattgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaat 106  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| | |||||||||||    
T  8667249 tgtctcagggattcaaagatatacaagaatgatattgatgatgttgtacttgtcggtggctcgtctaggattcccaaagtgcaggaacaattgctagaat 8667150  T
Q  107 ttttcaaggggaaggaattattcatgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaa 206  Q
     ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8667149 atttcaaggggaaggaattattcatgggtatcaacccagacgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctgtaagaa 8667050  T
Q  207 tgtcccgaacttggtg 222  Q
    |||||| |||||||||    
T  8667049 tgtccccaacttggtg 8667034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 8654286 - 8654065
Alignment:
Q  1 gacagttgtctcagggattcaaagatatacaagaatgatattgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgc 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||    
T  8654286 gacagttgtctcagagattcaaagatatacaagaatgatattgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgc 8654187  T
Q  101 tagaatttttcaaggggaaggaattattcatgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctt 200  Q
    |||| ||||||||||||||||  || || |||  ||||||||||||||||||| |||| ||||| || |||||||||||||||||||||||||||| |||    
T  8654186 tagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaagactt 8654087  T
Q  201 taagaatgtcccgaacttggtg 222  Q
    |||||||||||| |||||||||    
T  8654086 taagaatgtccccaacttggtg 8654065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 8659196 - 8658978
Alignment:
Q  4 agttgtctcagggattcaaagatatacaagaatgatattgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctag 103  Q
    |||||||| || |||||||| ||| | | || ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||    
T  8659196 agttgtcttagcgattcaaaaatacagatgagtgatattgacgatattgttcttgtgggtggttcgtctaggattcccaaagtgcaagatctattgcaag 8659097  T
Q  104 aatttttcaaggggaaggaattattcatgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaa 203  Q
    |  |||||     |||||  |||| || | |||||||||||||||||||||||||||||||||||||| |||| |||||| |||| ||  ||||||||||    
T  8659096 accttttcccaaagaaggttttatacaagagtatcaacccagatgaggctgttgcttatggtgcagctcttcaagctgctgttttaagcaaaggctttaa 8658997  T
Q  204 gaatgtcccgaacttggtg 222  Q
    ||||||||| |||||||||    
T  8658996 gaatgtcccaaacttggtg 8658978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 1301293 - 1301076
Alignment:
Q  4 agttgtctcagggattcaaagatatacaagaatgatattgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctag 103  Q
    |||||||| || |||||||| |||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||    
T  1301293 agttgtcttagcgattcaaaaatatgcatgagtgatatcgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaagatatattgcaag 1301194  T
Q  104 aatttttcaaggggaaggaattattcatgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaa 203  Q
    |  |||||  || ||| |  |||| || | |||||||||| || |||||||||||||||||||||||| |||| ||||||||||| ||  |||| || ||    
T  1301193 acattttcccggagaaagttttatacaagagtatcaaccc-gacgaggctgttgcttatggtgcagctattcaagctgctattttaagcaaaggattcaa 1301095  T
Q  204 gaatgtcccgaacttggtg 222  Q
    ||||||||| |||||||||    
T  1301094 gaatgtcccaaacttggtg 1301076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 13333829 - 13333921
Alignment:
Q  130 atgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13333829 atgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagactgtcccgaacttggtg 13333921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 209
Target Start/End: Original strand, 29582215 - 29582381
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    |||||||| || ||| | |||||||| ||||| ||||||||||||||  | ||||||| ||||||||||||||||||||| || | |||| | |||||||    
T  29582215 gatgatatcgtccttattggtggctcttctagaattcccaaagtgcatcagctattgcaagaatttttcaaggggaaggatttgtgcatgagcatcaacc 29582314  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgt 209  Q
    | ||||||||||||||||||||||||||||| ||||||||| |  ||| ||||||| || |||||||    
T  29582315 ctgatgaggctgttgcttatggtgcagctgtgcaggctgctttgctgattgaaggcattgagaatgt 29582381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 40 - 227
Target Start/End: Complemental strand, 17260038 - 17259851
Alignment:
Q  40 attgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatca 139  Q
    ||||||||| |||| ||||| ||||| || ||||||||||| ||||||||| | |||||||  || || |||||||| |||||||||| || | | ||||    
T  17260038 attgatgatgttgtccttgttggtggatcttctaggattccgaaagtgcagcaactattgcaggatttcttcaagggtaaggaattatgcaagagcatca 17259939  T
Q  140 acccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgatgat 227  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| | || |||| | || | |||||||| || ||||||||| ||||    
T  17259938 accctgatgaggctgttgcttatggtgctgctgttcaggctgctttgttaagtggaagcgtcaagaatgttccaaacttggtgttgat 17259851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 17267735 - 17267549
Alignment:
Q  41 ttgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaattt-ttcaaggggaaggaattattcatgcgtatca 139  Q
    |||||||| |||| ||||| ||||| || ||||||||||| ||||||||| | ||||||| |||| || ||||||||||||||||||| ||   ||||||    
T  17267735 ttgatgatgttgtccttgttggtgggtcttctaggattccgaaagtgcagcaactattgc-agaacttcttcaaggggaaggaattatgcaaaagtatca 17267637  T
Q  140 acccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgatgat 227  Q
    |||| ||||||||||||||||||||||| ||||||||||||||| | || |||| | || | |||||||| || ||||||||| ||||    
T  17267636 accctgatgaggctgttgcttatggtgctgctgttcaggctgctttgttaagtggaagcgtcaagaatgttccaaacttggtgttgat 17267549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 6789305 - 6789127
Alignment:
Q  44 atgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaaccc 143  Q
    ||||| |||| ||||| ||||| || ||||| ||||||||||||||  | ||||||| |||| |||||| ||| ||||| || | |||| | ||||||||    
T  6789305 atgatgttgtccttgttggtgggtcttctagaattcccaaagtgcaacaactattgcaagaagttttcatgggaaaggatttgtgcatgagcatcaaccc 6789206  T
Q  144 agatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtg 222  Q
     ||||||||||||||||| ||||||||||| ||||||||| | ||||| ||||||| ||||| ||| || |||||||||    
T  6789205 tgatgaggctgttgcttacggtgcagctgtccaggctgctttgttgagcgaaggctctaagagtgttccaaacttggtg 6789127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 27831249 - 27831433
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    |||||| |||| ||||| |||||||| || |||||||||||||||||| | ||||||   || ||||||||||| ||||| || | || | | ||||| |    
T  27831249 gatgatgttgtccttgttggtggctcttcaaggattcccaaagtgcagcagctattggcggactttttcaagggaaaggatttgtgcaagagcatcaatc 27831348  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgatgat 227  Q
    | |||||||||||||||| |||||||||||| ||||||||| | |||||||| | | ||| |||||| || ||||||||| ||||    
T  27831349 ctgatgaggctgttgcttttggtgcagctgtgcaggctgctttgttgagtgatgacattatgaatgttccaaacttggtgttgat 27831433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 8590432 - 8590292
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    |||||| |||| ||||| ||||| || ||||||||||||||||||||| | ||||||| ||| ||||| | |||||||||  | | ||   | ||||| |    
T  8590432 gatgatgttgtacttgttggtggttcttctaggattcccaaagtgcagcagctattgcaagacttttttatggggaaggatctttacaatagcatcaatc 8590333  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgct 183  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  8590332 cagatgaggctgttgcttatggtgcagctgttcaagctgct 8590292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 209
Target Start/End: Original strand, 29578047 - 29578212
Alignment:
Q  44 atgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaaccc 143  Q
    |||| ||||| ||||| || || || ||||| ||||||||||||| | | ||||||| ||| ||||||||||| | ||| || | |||| | || |||||    
T  29578047 atgaaattgtccttgttggaggttcatctagaattcccaaagtgcggaaactattgcaagactttttcaagggtagggatttgtgcatgagcataaaccc 29578146  T
Q  144 agatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgt 209  Q
     || |||||||||||||||||||||||||| ||||||||| | |||| ||| ||| ||||||||||    
T  29578147 tgacgaggctgttgcttatggtgcagctgtgcaggctgctttgttgattgatggcattaagaatgt 29578212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 7878107 - 7878247
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    |||||| |||| ||||| ||||| || |||||||||| |||||||||| | |||||||  || ||||| |||||||||||  | | ||   | |||||||    
T  7878107 gatgatgttgtacttgttggtggatcatctaggattctcaaagtgcagcagctattgcaggacttttttaaggggaaggatatttgcagtagcatcaacc 7878206  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgct 183  Q
    | ||||| |||||||||||||||||||||||||||||||||    
T  7878207 cggatgaagctgttgcttatggtgcagctgttcaggctgct 7878247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 8545364 - 8545248
Alignment:
Q  106 tttttcaaggggaaggaattattcatgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaaga 205  Q
    ||||| |||||||||||||||| || | | || ||||| ||||||||||||||||||||||||||||| ||||||||| |  ||||||||| |  |||||    
T  8545364 ttttttaaggggaaggaattatgcaagagcattaaccctgatgaggctgttgcttatggtgcagctgtccaggctgctttgctgagtgaagacaataaga 8545265  T
Q  206 atgtcccgaacttggtg 222  Q
    ||||||| ||| |||||    
T  8545264 atgtcccaaacatggtg 8545248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 8581494 - 8581318
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    |||||| |||| ||||| ||||| || ||||||||||| ||||||    | ||||| |  || |||||| ||||||||||||||| || | | |||||||    
T  8581494 gatgatgttgtccttgttggtggttcttctaggattcctaaagtgagacagctattacaggagtttttccaggggaaggaattatgcaagagcatcaacc 8581395  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttg 219  Q
    | ||||||||||||||||||||||| ||| ||||||||||| |  | ||||||||| |||||| ||| || ||||||    
T  8581394 ctgatgaggctgttgcttatggtgctgctattcaggctgctttggttagtgaaggcattaagagtgttccaaacttg 8581318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 8616475 - 8616335
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||   || |||||| | |||||||| || | || |   ||||| |    
T  8616475 gatgatattgttcttgtcggtggctcgtctaggattcctaaagtgcaggaactattgagtgactttttcgatgggaaggatttgtgcaagaacatcaatc 8616376  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgct 183  Q
    | |||||||||||||||  ||| ||||| ||||||||||||    
T  8616375 ctgatgaggctgttgctagtggggcagcagttcaggctgct 8616335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 8537830 - 8537651
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    |||||| |||| || || |||||||| |||||||||||||||||||||  |||  ||| | | ||||||| |||||||||  | || |   | |||||||    
T  8537830 gatgatgttgtactagttggtggctcttctaggattcccaaagtgcagagtctgctgcaaaactttttcagggggaaggatatttttaaaagcatcaacc 8537731  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtg 222  Q
    | ||||| ||||||||||||||||| ||||| ||||||||| | ||||| | |||| |||||| ||| ||||||||||||    
T  8537730 ctgatgaagctgttgcttatggtgctgctgtccaggctgctttgttgagcggaggcattaagactgttccgaacttggtg 8537651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 8576056 - 8575941
Alignment:
Q  107 ttttcaaggggaaggaattattcatgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaa 206  Q
    |||||||||||||||||||||  | | | |||||||| ||||||||||||||||||||||| | ||| || |||||| | ||||||||||||  ||||||    
T  8576056 ttttcaaggggaaggaattatgtaagagcatcaaccctgatgaggctgttgcttatggtgctgttgtccaagctgctttgttgagtgaaggcagtaagaa 8575957  T
Q  207 tgtcccgaacttggtg 222  Q
    ||| || |||||||||    
T  8575956 tgttccaaacttggtg 8575941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 198
Target Start/End: Complemental strand, 8609711 - 8609556
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    |||||| |||||||||| || || || ||||||||||| |||||| || | ||| ||| ||| |||||||| || ||||| || |  ||| | |||||||    
T  8609711 gatgatgttgttcttgttggaggttcttctaggattccgaaagtgaagcagctactgcaagactttttcaatggaaaggatttgtgtatgagcatcaacc 8609612  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggc 198  Q
    | |||||||| |||||||||||||| ||||| ||||||||| | ||| ||||||||    
T  8609611 ctgatgaggcggttgcttatggtgctgctgtccaggctgctttgttgggtgaaggc 8609556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 3146965 - 3146879
Alignment:
Q  136 atcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtg 222  Q
    |||||||| |||||||| |||||||||||||||||||| || |||||| | |||||||||| |||||| ||||| || |||||||||    
T  3146965 atcaaccctgatgaggccgttgcttatggtgcagctgtgcaagctgctttgttgagtgaagactttaaaaatgttccaaacttggtg 3146879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 181
Target Start/End: Complemental strand, 8570105 - 8569967
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    |||||| |||| ||||| ||||| || ||||||||||| ||||||  | | ||||| | ||| |||||| ||||||||||||||| ||   | || ||||    
T  8570105 gatgatgttgtccttgttggtggttcttctaggattcctaaagtgaggcagctattacaagagtttttccaggggaaggaattatgcaacagcattaacc 8570006  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctg 181  Q
    | ||||||||||||||||| ||||||||| |||||||||    
T  8570005 ctgatgaggctgttgcttacggtgcagctattcaggctg 8569967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 8102460 - 8102311
Alignment:
Q  44 atgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaaccc 143  Q
    ||||| |||||||||| ||||| ||  |||||||||||||||| ||| | || |||| ||| || ||||| || |||||  ||| ||   | ||||||||    
T  8102460 atgatgttgttcttgttggtggttcaactaggattcccaaagttcagcaactgttgcaagacttcttcaatggtaaggagctatgcaaaagcatcaaccc 8102361  T
Q  144 agatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtg 193  Q
     || |||||||||||||||||||| |||||||| |||||||| |||||||    
T  8102360 cgacgaggctgttgcttatggtgccgctgttcaagctgctatcttgagtg 8102311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 27846573 - 27846664
Alignment:
Q  136 atcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgatgat 227  Q
    |||||||| |||||||||||||||| ||| |||||||| ||||||||| | |||||||| | | |||||||||| || ||||| ||| ||||    
T  27846573 atcaaccctgatgaggctgttgcttttggagcagctgtgcaggctgctttgttgagtgatgacattaagaatgttccaaacttagtgttgat 27846664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 8646608 - 8646492
Alignment:
Q  106 tttttcaaggggaaggaattattcatgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaaga 205  Q
    |||||||| | ||||||||||| |  | | |||||||| |||| ||| ||||||||||| ||||| |||||||||||| | ||  |||| ||||||||||    
T  8646608 tttttcaatgagaaggaattatgcgagagcatcaaccctgatgtggccgttgcttatggcgcagccgttcaggctgctttattatgtgatggctttaaga 8646509  T
Q  206 atgtcccgaacttggtg 222  Q
    |||  || |||||||||    
T  8646508 atgctccaaacttggtg 8646492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 39985338 - 39985290
Alignment:
Q  145 gatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtg 193  Q
    |||||||||||||| |||||||| ||||||||||||||||| |||||||    
T  39985338 gatgaggctgttgcatatggtgctgctgttcaggctgctatcttgagtg 39985290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 8017878 - 8017937
Alignment:
Q  134 gtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtg 193  Q
    ||||||||||||| |||||||||||||||||||| ||||| || || || ||||||||||    
T  8017878 gtatcaacccagacgaggctgttgcttatggtgccgctgtacaagcagcaattttgagtg 8017937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 8586053 - 8586259
Alignment:
Q  16 gattcaaagatatacaagaatgatattgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaagg 115  Q
    ||||| |||||| | ||||||| | | || |||||||| ||||| ||||||||||| || ||||||||||| ||||| ||||||   || || ||||| |    
T  8586053 gattctaagatagagaagaatggtgtagacgatattgtccttgtcggtggctcgtccagaattcccaaagtacaggaactattgagtgacttcttcaatg 8586152  T
Q  116 ggaaggaattattcatgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaa 215  Q
    |||| || |||| || |   ||||| || |||||||||||||||  ||| || || ||||||||| || |  || || ||| ||||||||| || || ||    
T  8586153 ggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggctgcagttcaggcttctttgctgtgtaaagactttaagaaagttccaaa 8586252  T
Q  216 cttggtg 222  Q
    |||||||    
T  8586253 cttggtg 8586259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 13333788 - 13333826
Alignment:
Q  1 gacagttgtctcagggattcaaagatatacaagaatgat 39  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  13333788 gacagttgtctcagggattcaaagatatacaagagtgat 13333826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 8671608 - 8671651
Alignment:
Q  179 ctgctattttgagtgaaggctttaagaatgtcccgaacttggtg 222  Q
    |||||||||||||  ||||||||||||||||||| |||||||||    
T  8671608 ctgctattttgagcaaaggctttaagaatgtccccaacttggtg 8671651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 9336229 - 9336444
Alignment:
Q  7 tgtctcagggattcaaagatatacaagaatgatattgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaat 106  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||    
T  9336229 tgtctcagggattcaaagatatacaagagtaatattgatgatattgttcttgtgggtggctcgtctaggattccgaaagtgcaagaactattgctagaat 9336328  T
Q  107 ttttcaaggggaaggaattattcatgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaa 206  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9336329 ttttcaaggggaaggaattattcatgggtatcaacccagatgaggctgttgcttatggtgcagctgttcaagctgctattttgagtgaaggctttaagaa 9336428  T
Q  207 tgtcccgaacttggtg 222  Q
    ||  || |||||||||    
T  9336429 tgcgcccaacttggtg 9336444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 30775046 - 30774867
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    ||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||||   | || ||||| |||||||| || | || | | ||||| |    
T  30775046 gatgatattgttcttgtcggtggttcttctaggattcccaaagtgcaggaactattgcgtaatttcttcaatgggaaggatttgtgcaagagcatcaatc 30774947  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtg 222  Q
    | |||||||| |||||| | || |||||||| ||||||||| | |||||||||||| ||||||||| ||| || ||||||    
T  30774946 ctgatgaggcagttgctcacggggcagctgtccaggctgctctattgagtgaaggcattaagaatgccccaaagttggtg 30774867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 198
Target Start/End: Complemental strand, 35132250 - 35132095
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    |||||| |||||||||| || || || ||||||||||||||||||||| | ||||||| | | |||||||| |||||||| || | || | | || ||||    
T  35132250 gatgatgttgttcttgttggagggtcttctaggattcccaaagtgcagcagctattgcaaaactttttcaaagggaaggagttgtgcaagagcattaacc 35132151  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggc 198  Q
    | ||||||||||| |||||||| ||||| |||||||||||| | |||||| |||||    
T  35132150 ccgatgaggctgtagcttatggggcagcagttcaggctgctttgttgagtaaaggc 35132095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 191
Target Start/End: Original strand, 23596957 - 23597107
Alignment:
Q  41 ttgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaa 140  Q
    |||||||| |||||||||| || || ||| ||||||||||||| || ||  | || |||| ||| || ||||| ||||||||| | |  | | | |||||    
T  23596957 ttgatgatgttgttcttgttggcggatcgactaggattcccaaggttcaacaacttttgcaagatttcttcaatgggaaggaactttgtaagagcatcaa 23597056  T
Q  141 cccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgag 191  Q
    ||| |||||||||||||||||||| || || || || ||||||||||||||    
T  23597057 ccctgatgaggctgttgcttatggcgctgcagtccaagctgctattttgag 23597107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 23588200 - 23588257
Alignment:
Q  136 atcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtg 193  Q
    |||||||| ||||| |||||||| ||||| ||||| || || ||||||||||||||||    
T  23588200 atcaaccccgatgaagctgttgcatatggggcagccgtccaagctgctattttgagtg 23588257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 54396126 - 54396069
Alignment:
Q  134 gtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgag 191  Q
    |||| ||||| ||||| ||||||||||||||||| |||||||| || || ||||||||    
T  54396126 gtattaaccctgatgaagctgttgcttatggtgctgctgttcaagcagcgattttgag 54396069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 36 - 212
Target Start/End: Original strand, 16657884 - 16658060
Alignment:
Q  36 tgatattgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgt 135  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||| ||   ||    
T  16657884 tgatattgatgacgttgttcttgtgggtggctcatctaggattcccaaagtgcaggatctattgcaagactttttcaagggcaaggatttatgcaaaagt 16657983  T
Q  136 atcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtccc 212  Q
    |||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16657984 atcaacccggatgaagctgttgcttacggtgcagctgttcaagctgctattttgagtgaaggctttaagaatgtccc 16658060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 16662367 - 16662545
Alignment:
Q  44 atgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaaccc 143  Q
    |||||||||||||||| || ||||||||||||||||| |||||||||||  ||||||   | || ||||| |||||||| || | || | | ||||||||    
T  16662367 atgatattgttcttgtcgggggctcgtctaggattccaaaagtgcaggaattattgcgtaacttcttcaatgggaaggagttgtgcaagagcatcaaccc 16662466  T
Q  144 agatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtg 222  Q
     |||||||||||||||||||| |||||||| || |||||| | |||||||||||| ||||| |||| || |||||||||    
T  16662467 tgatgaggctgttgcttatggggcagctgtgcaagctgctgtgttgagtgaaggcattaaggatgttccaaacttggtg 16662545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 43625143 - 43625027
Alignment:
Q  106 tttttcaaggggaaggaattattcatgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaaga 205  Q
    ||||||||||||||||||| || |    | || ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  43625143 tttttcaaggggaaggaatcatgcgaaagcataaaccctgatgaggctgttgcttatggtgcagctgtccaggctgctattttgagtaaaggcattaaga 43625044  T
Q  206 atgtcccgaacttggtg 222  Q
    |||| || || ||||||    
T  43625043 atgttccaaaattggtg 43625027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 12245780 - 12245959
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    |||||| |||| ||||| ||||| || ||||||||||||||||| ||  | ||||| |  || |||||||| ||||||||||| | || | | || ||||    
T  12245780 gatgattttgtacttgttggtggatcttctaggattcccaaagtccaacagctattacaggactttttcaacgggaaggaattgtgcaagagcattaacc 12245879  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtg 222  Q
    | || ||||||||||||||||| ||||||||||| |||||| | |||||| |||   |||||||||| || || ||||||    
T  12245880 ctgacgaggctgttgcttatggggcagctgttcaagctgctttgttgagtaaagatgttaagaatgttccaaatttggtg 12245959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 14703202 - 14703023
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    |||||| |||||||||| ||||| || ||| ||||||||||||| ||| |  |||| |  || |||||| |||||||||| || | ||   | || ||||    
T  14703202 gatgatgttgttcttgtcggtgggtcttctcggattcccaaagtacagcaattattacaggactttttccaggggaaggagttgtgcaacagcattaacc 14703103  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtg 222  Q
    | ||||| ||||| |||||||| |||||||||||||||||| | |||||||||| | | |||||||| ||||| ||||||    
T  14703102 ctgatgaagctgtagcttatggggcagctgttcaggctgctttgttgagtgaagacgtcaagaatgttccgaagttggtg 14703023  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 11999201 - 11999023
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    |||||| |||| ||||| ||||| || |||||||| |||||||| ||  | ||||| |  || |||||||| |||||||| || | || | | || ||||    
T  11999201 gatgatgttgtacttgttggtggatcttctaggat-cccaaagtccaacagctattacatgactttttcaacgggaaggagttgtgcaagagcattaacc 11999103  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtg 222  Q
    | ||||||||||| |||||||| ||||||||||| |||||| | ||||||||||   |||||||||| || || ||||||    
T  11999102 ctgatgaggctgtagcttatggggcagctgttcaagctgctttgttgagtgaagatgttaagaatgttccaaatttggtg 11999023  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 7541918 - 7541857
Alignment:
Q  145 gatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaa 206  Q
    |||||||||||||||||||| |||||||||||||||||  | ||||||| |||| |||||||    
T  7541918 gatgaggctgttgcttatggggcagctgttcaggctgcattgttgagtggaggcgttaagaa 7541857  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 12234456 - 12234349
Alignment:
Q  70 tctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacccagatgaggctgttgcttatggtgcag 169  Q
    ||||||||||||||||||||| | |||||||  || |||||||||||||||||  | | || | |||| ||||| || ||||| ||||||||||  ||||    
T  12234456 tctaggattcccaaagtgcagcaactattgcaggattttttcaaggggaaggagctgtgcaagagtattaaccctga-gaggcggttgcttatgaggcag 12234358  T
Q  170 ctgttcagg 178  Q
    |||||||||    
T  12234357 ctgttcagg 12234349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 196
Target Start/End: Original strand, 12258955 - 12259108
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    |||||| |||| ||||| ||||| || |||||||||| |||||||||| | ||||| |  || |||||||||||||| || || | || | | || || |    
T  12258955 gatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatc 12259054  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaag 196  Q
    | ||||||||||| |||| ||| || ||| ||||||||||| | || |||||||    
T  12259055 ctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtgaag 12259108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 38 - 215
Target Start/End: Original strand, 4678926 - 4679103
Alignment:
Q  38 atattgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtat 137  Q
    ||||||||||| |||||||||||||||| || || |||||||||||||||||||||||||||| ||| ||||| ||| ||||||| || | || | ||||    
T  4678926 atattgatgatgttgttcttgtgggtggttcatcgaggattcccaaagtgcaggatctattgcaagacttttttaagcggaaggatttgtgcaagagtat 4679025  T
Q  138 caacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaa 215  Q
    |||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||| |||||||||||||||||    
T  4679026 caacccagatgaggctgttgcttatggtgcagctatccaagctgctattttgagcgaaggttttaagaatgtcccgaa 4679103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 44 - 224
Target Start/End: Complemental strand, 15594827 - 15594647
Alignment:
Q  44 atgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaaccc 143  Q
    ||||||||||  |||| ||||| || ||||||||||||||||||||  | ||||||   || |||||| |||| |||||||| | |||| | ||||||||    
T  15594827 atgatattgtcattgttggtgggtcttctaggattcccaaagtgcaacaactattgaaggattttttcgagggaaaggaattgtgcatgagcatcaaccc 15594728  T
Q  144 agatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgat 224  Q
     ||||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||| ||||| || |||||||||||    
T  15594727 tgatgaggctgttgcttatggtgcagctgtccaggctgctttgttgagtgaaggttttaaaaatgttccaaacttggtgat 15594647  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 34467174 - 34467341
Alignment:
Q  55 cttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacccagatgaggctg 154  Q
    ||||| || ||||| ||||||||||||||||||||| | |||||||  || |||||||| || |||||  ||| ||   | |||||||| ||||||||||    
T  34467174 cttgtcgggggctcttctaggattcccaaagtgcagcagctattgcgggactttttcaatggtaaggatctatgcaatagcatcaaccctgatgaggctg 34467273  T
Q  155 ttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtg 222  Q
    | |||||||  |||||||| || |||||| | |||||| |||||||||| ||||| || |||||||||    
T  34467274 tcgcttatgtcgcagctgtgcaagctgctttgttgagtaaaggctttaacaatgttccaaacttggtg 34467341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 52549422 - 52549499
Alignment:
Q  145 gatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtg 222  Q
    ||||||| ||| |||||||| |||||||||||||||||  | |||||||||||| || ||||||| || || ||||||    
T  52549422 gatgaggttgtagcttatggcgcagctgttcaggctgcattgttgagtgaaggcattcagaatgttccaaagttggtg 52549499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 215
Target Start/End: Complemental strand, 12528298 - 12528126
Alignment:
Q  43 gatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacc 142  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||| || | |||||||  || ||||||||||| ||||| |||| || | | |||||||    
T  12528298 gatgatattgtacttgttggtggctcgtctaggattcccaaagtgaagcagctattgcaggagtttttcaagggcaaggagttatacaagagcatcaacc 12528199  T
Q  143 cagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaa 215  Q
    | ||||||||||||||||||||||| ||||||||||||||| | |||||||||||| | |||| ||| |||||    
T  12528198 ctgatgaggctgttgcttatggtgccgctgttcaggctgctttgttgagtgaaggcatgaagactgttccgaa 12528126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 43744609 - 43744450
Alignment:
Q  44 atgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaattattcatgcgtatcaaccc 143  Q
    ||||| |||||||||| |||||||| ||||||||||| ||||| ||  | |||||||  ||||||||    |||||||| || |  | |   || |||||    
T  43744609 atgatgttgttcttgttggtggctcctctaggattccaaaagtacaacaactattgcaggaattttttgcagggaaggatttgtgtaagaacattaaccc 43744510  T
Q  144 agatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaa 203  Q
     |||||||| ||||||  |||||||||||| ||||||||| | |||||||||||||||||    
T  43744509 tgatgaggcagttgctattggtgcagctgtgcaggctgctttgttgagtgaaggctttaa 43744450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 28219616 - 28219533
Alignment:
Q  139 aacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtg 222  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| || || ||||| ||||||    
T  28219616 aaccctgatgaggctgttgcttatggtgcagctgtgcaggctgctttgttgagtgaaggctttaaaaaagttccgaagttggtg 28219533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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