View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10834_low_13 (Length: 233)
Name: NF10834_low_13
Description: NF10834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10834_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 2285984 - 2285783
Alignment:
| Q |
15 |
atgaagagatttatatagaaaaagaaagaaagttttcacttactattagaagctttaggaggatagagagtcctaagagcaacagaatcaataagaggac |
114 |
Q |
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| T |
2285984 |
atgaagagatttatatagaaaaagaaagaaagttttcacttactattagaagctttaggaggatagagagtcctaagagcaacagaatcaataagaggac |
2285885 |
T |
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| Q |
115 |
cacaagcaggatcttcttcaacgccaggattatgaataaccatttccacaacatcatattcagctttaaaaccataagcaattggatcccaaccactact |
214 |
Q |
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| T |
2285884 |
cacaagcaggatcttcttcaacaccaggattatgaataaccatttccacaacatcatattcagctttaaaaccataagcaattggatcccaaccactact |
2285785 |
T |
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| Q |
215 |
tg |
216 |
Q |
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|| |
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| T |
2285784 |
tg |
2285783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 2289761 - 2289652
Alignment:
| Q |
18 |
aagagatttatatagaaaaagaaagaaagttttcacttactattagaagctttaggaggatagagagtcctaagagcaacagaatcaataagaggaccac |
117 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |||| |
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| T |
2289761 |
aagagatttatgtagaaaaagaaagaaagtaga-acttactattagaagctttaggaggatagag--tcctaagagcaacagaatcattaagaagtccac |
2289665 |
T |
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| Q |
118 |
aagcaggatcttc |
130 |
Q |
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||||||||||||| |
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| T |
2289664 |
aagcaggatcttc |
2289652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 44409193 - 44409144
Alignment:
| Q |
92 |
agcaacagaatcaataagaggaccacaagcaggatcttcttcaacgccag |
141 |
Q |
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|||||||||||||||||| ||||||||||| ||||| |||||||| |||| |
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| T |
44409193 |
agcaacagaatcaataagtggaccacaagctggatcatcttcaacaccag |
44409144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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