View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10834_low_2 (Length: 371)
Name: NF10834_low_2
Description: NF10834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10834_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 27779869 - 27780204
Alignment:
| Q |
19 |
agaaataagctcaaaaccaactgtccataatggaagaagaacaagagaagttaaagagaagttgaagtttctttcattacaaagttaaggtcgaccatgc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27779869 |
agaaataagctcaaaaccaactgtccataatggaagaagaacaagagaagttaaagagaagttgaagtttctttcattacaaagttaaggtcgaccatgc |
27779968 |
T |
|
| Q |
119 |
aaggtctatcttgaaagtaaataagtctccatatttttta-accaataccaatgcaggcatttactggatccaactcttgtactattttagtaacatggt |
217 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
27779969 |
aaggtctatcttaaaagtaaataagtttccatatttttttgaccaataccaatgtaggcatttactagatccaactcttgtactattttagtaacaaggt |
27780068 |
T |
|
| Q |
218 |
ttttgttgtgccctgcctatgttggtggtgcagtgtacctcacccgtcattacaagagaatccatatgatctacaaattatgaaatatacacttcaaata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27780069 |
ttttgttgtgccctgcctatgttggtggtgcagtgtacctcacccgtcattacaagagaatccatatgatctacaaattatgaaatatacacttcaaata |
27780168 |
T |
|
| Q |
318 |
aaacttagaccctacaactcctcccataccaacatc |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
27780169 |
aaacttagaccctacaactcctcccataccaacatc |
27780204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University