View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10834_low_4 (Length: 354)

Name: NF10834_low_4
Description: NF10834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10834_low_4
NF10834_low_4
[»] chr7 (2 HSPs)
chr7 (20-344)||(44501273-44501597)
chr7 (188-276)||(32413624-32413712)
[»] chr3 (12 HSPs)
chr3 (94-299)||(45870386-45870593)
chr3 (94-281)||(20994965-20995154)
chr3 (94-281)||(20981806-20981995)
chr3 (103-158)||(20977477-20977532)
chr3 (85-297)||(45856777-45856991)
chr3 (79-158)||(2996371-2996450)
chr3 (188-243)||(25601740-25601795)
chr3 (29-155)||(20948805-20948934)
chr3 (99-158)||(20949493-20949552)
chr3 (220-278)||(778229-778287)
chr3 (195-276)||(25596902-25596983)
chr3 (85-153)||(45881805-45881873)
[»] chr4 (1 HSPs)
chr4 (91-299)||(3978077-3978287)
[»] chr5 (4 HSPs)
chr5 (102-285)||(7894982-7895166)
chr5 (69-299)||(38142015-38142247)
chr5 (20-68)||(7976635-7976683)
chr5 (247-299)||(7976853-7976905)
[»] chr6 (7 HSPs)
chr6 (187-297)||(33844279-33844389)
chr6 (188-245)||(33840288-33840345)
chr6 (188-276)||(7115536-7115624)
chr6 (188-276)||(7120608-7120696)
chr6 (188-276)||(7124012-7124100)
chr6 (220-276)||(7140758-7140814)
chr6 (220-276)||(8680372-8680428)
[»] chr2 (1 HSPs)
chr2 (187-275)||(43864048-43864136)


Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 20 - 344
Target Start/End: Original strand, 44501273 - 44501597
Alignment:
Q  20 aaatagcacaattcacaatccttttgagtaggtgaaactccaagcgaccattatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagaga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501273 aaatagcacaattcacaatccttttgagtaggtgaaactccaagcaaccattatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagaga 44501372  T
Q  120 taaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctataagtgcaggaagacgtttccaaagatccttccatctggg 219  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501373 taaaaccttagacacgaatttattgaatatcttgaaagtgtgaaaatctgaagaatgctataagtgcaggaagacgtttccaaagatccttccatctggg 44501472  T
Q  220 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgccaagtcagtctttacttaca 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44501473 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgccaagtcggtctttacttaca 44501572  T
Q  320 ctctcagtgagttttaatttcttct 344  Q
    |||||||||||||||||||||||||    
T  44501573 ctctcagtgagttttaatttcttct 44501597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 276
Target Start/End: Complemental strand, 32413712 - 32413624
Alignment:
Q  188 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 276  Q
    |||||||| ||||| |||| ||||||||| | ||||||||||||||| ||||| |||| |||||  |||||| | || |||||||||||    
T  32413712 ggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaag 32413624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 299
Target Start/End: Original strand, 45870386 - 45870593
Alignment:
Q  94 agtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcaggaa 191  Q
    |||||||||||||||||  | |||||||||||| |||| || ||| |  |||||||||| |||||  |||| ||   |||||||  |||||| | |||||    
T  45870386 agtgagatagaggaatcccggagagataaaaccctagaaacaaatctggtgaatatcttataagttcgaaagtcatcagaatgcaatataagagaaggaa 45870485  T
Q  192 gacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcagg 291  Q
    ||||||||||||||||| |  |||| || || |||| |||||| ||||| |||| |||||||||| |||| |||||||||||||||||||  ||||||||    
T  45870486 gacgtttccaaagatccgtatatcttggtgataaaacgcaagtttgaactgcgtctttggcattcgaaaacgacagtatgtgaaggataacacagtcagg 45870585  T
Q  292 taagtcgc 299  Q
    || |||||    
T  45870586 taggtcgc 45870593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 281
Target Start/End: Original strand, 20994965 - 20995154
Alignment:
Q  94 agtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctat--aagtgcaggaa 191  Q
    |||||||||||||||||  |||||||||||| ||||||||||||| |  ||||||||||| ||||  |||| |||  |  |||| ||  ||| |||||||    
T  20994965 agtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaa 20995064  T
Q  192 gacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataa 281  Q
    |||||||||||||||||||  || | ||||| ||||  ||||| |||||||||| |||||  |||| ||| || || |||||||||||||    
T  20995065 gacgtttccaaagatccttatatattggggataaaacacaagtttgaacagcgtctttggtgttcagaaaggagagaatgtgaaggataa 20995154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 281
Target Start/End: Original strand, 20981806 - 20981995
Alignment:
Q  94 agtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcaggaa 191  Q
    |||||||||||||||||  |||||||||||| ||||||||||||| |  ||||||||||| || |  |||| |||  |  ||||  | |||| |||||||    
T  20981806 agtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaaattacgaaagtctctattatgcaatgtaagagcaggaa 20981905  T
Q  192 gacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataa 281  Q
    |||||||||||||||| ||  || | ||||| ||||  ||||| |||||||| | |||||  |||| ||| || || |||||||||||||    
T  20981906 gacgtttccaaagatctttatatattggggataaaacacaagtttgaacagcatgtttggtgttcagaaaggagagaatgtgaaggataa 20981995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 20977532 - 20977477
Alignment:
Q  103 gaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 158  Q
    ||||||||| |||||||||||| |||||||||||||||  ||||||||||||||||    
T  20977532 gaggaatcgcgaagagataaaatcttagacacgaatttggtgaatatcttgtaagt 20977477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 297
Target Start/End: Original strand, 45856777 - 45856991
Alignment:
Q  85 agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctat--aa 182  Q
    |||| ||| |||| ||||||||||||  |||||||||||||||||||||| || ||  ||||||||||| ||||  |||| ||  | |||  | ||  ||    
T  45856777 agagcgtggagtgcgatagaggaatcacgaagagataaaaccttagacacaaagttggtgaatatcttgaaagttcgaaagtcataggaacacaatgtaa 45856876  T
Q  183 gtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataat 282  Q
    |    |||||  ||||||| ||||||||  |||| |||||||||||||||||   ||| |||| ||| || |||| ||||||||||||||| ||||||||    
T  45856877 gatttggaagttgtttccagagatccttgtatcttggggacaaaatgcaagttccaaccgcgtctttagcgttcagaaaagacagtatgtggaggataat 45856976  T
Q  283 gcagtcaggtaagtc 297  Q
      ||||| |||||||    
T  45856977 atagtcatgtaagtc 45856991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 2996371 - 2996450
Alignment:
Q  79 aaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 158  Q
    |||| |||||| || | ||| ||||||||||||  ||||||||||||||||||||| |||||  ||||| ||||||||||    
T  2996371 aaatcgagagtctgcaatgaaatagaggaatcgcaaagagataaaaccttagacacaaatttggtgaatttcttgtaagt 2996450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 25601795 - 25601740
Alignment:
Q  188 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagc 243  Q
    |||| |||||||||||||| ||||||||| | ||||||||||||||| ||||||||    
T  25601795 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacagc 25601740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 20948934 - 20948805
Alignment:
Q  29 aattcacaatccttttgagtaggtgaaactccaagcgaccattatggc---tgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaac 125  Q
    |||||||||||||||| |||| ||||  ||| |||||| || |||| |   | ||||  |||||||||| || |||||||| |||  ||||||||||||     
T  20948934 aattcacaatccttttaagtatgtgaggctctaagcgaacaatatgacgcttaaaatcaagagtgtgtattgcgatagagggatcacgaagagataaaat 20948835  T
Q  126 cttagacacgaatttattgaatatcttgta 155  Q
    ||||||||| || ||  |||||||||||||    
T  20948834 cttagacacaaacttggtgaatatcttgta 20948805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 20949552 - 20949493
Alignment:
Q  99 gatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 158  Q
    ||||||||||||   |||||||||||  ||||||||||||||  ||||||||||||||||    
T  20949552 gatagaggaatcacaaagagataaaattttagacacgaatttggtgaatatcttgtaagt 20949493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 778229 - 778287
Alignment:
Q  220 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaagga 278  Q
    ||||||||||||||| || || || | |||||| ||||||||||| |||||||||||||    
T  778229 ggacaaaatgcaagtttggactgcctctttggctttcaaaaaagatagtatgtgaagga 778287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 25596983 - 25596902
Alignment:
Q  195 gtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 276  Q
    |||||||||||| ||||||||| |  |||||||||||||| ||||| || |  |||| ||||||||| ||||  ||||||||    
T  25596983 gtttccaaagattcttccatctcgtagacaaaatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaag 25596902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 45881805 - 45881873
Alignment:
Q  85 agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttg 153  Q
    |||||||| |||| ||||||||||||    |||||||||||||| ||||| |||||  |||||||||||    
T  45881805 agagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttg 45881873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 299
Target Start/End: Complemental strand, 3978287 - 3978077
Alignment:
Q  91 tgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctat--aagtgcag 188  Q
    ||||||| ||||||||||||| ||||| ||||||| |||||||| ||| |  ||||| |||||||||    ||| |||||||||||| ||  ||| | ||    
T  3978287 tgtagtgcgatagaggaatcgcgaagaaataaaactttagacactaatctggtgaatttcttgtaagctccaaagtctgaagaatgcaatgtaagagtag 3978188  T
Q  189 gaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtc 288  Q
    ||||||||||||||||||||||  |||| | ||| |||| |||||| ||||| ||||  ||||  || ||||| || ||||||||||| |||||||  ||    
T  3978187 gaagacgtttccaaagatccttatatcttgtggataaaacgcaagtttgaaccgcgtggttggtgtttaaaaacgagagtatgtgaagaataatgctttc 3978088  T
Q  289 aggtaagtcgc 299  Q
    |||||||||||    
T  3978087 aggtaagtcgc 3978077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 102 - 285
Target Start/End: Complemental strand, 7895166 - 7894982
Alignment:
Q  102 agaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctat--aagtgcaggaagacgtttc 199  Q
    |||||||| | |||||||||||||||||||||| |||||  ||||| || |||||    ||||||||| |||||   ||  ||| || || ||| |||||    
T  7895166 agaggaattgcgaagagataaaaccttagacacaaattttgtgaatttcgtgtaaaatcgaaaatctgtagaatcgaatctaagagcgggtagaagtttc 7895067  T
Q  200 caaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgca 285  Q
    || |||| ||||||||||   |||||||||||||| ||||| || | ||||||||||||||| || || |||||||||||||||||    
T  7895066 cagagattcttccatctgatagacaaaatgcaagt-tgaacggcttgtttggcattcaaaaaggaaagaatgtgaaggataatgca 7894982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 69 - 299
Target Start/End: Original strand, 38142015 - 38142247
Alignment:
Q  69 attatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgta-agtgtgaaaatc 167  Q
    |||||| ||||||||||||| ||  |||| || |||||||||  |||||| ||||||| ||  ||||||||| |||||||||  ||| |||  |||| ||    
T  38142015 attatgtctgaaattgagagagttcagtgcgagagaggaatcacgaagagttaaaaccctatgcacgaatttgttgaatatc-ggtatagttcgaaagtc 38142113  T
Q  168 tgaagaatgc--tataagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagac 265  Q
    |||||||| |  |||||| ||||||||| ||||||| |||||| |||||||   ||||| |||  ||||   ||| || | ||| || |||||||| ||     
T  38142114 tgaagaatccaatataagagcaggaagaagtttccatagatccctccatcttaaggacagaattgaagttgtaactgcctgtttagcgttcaaaaaggag 38142213  T
Q  266 agtatgtgaaggataatgcagtcaggtaagtcgc 299  Q
    ||||||||||||||||  ||||||||||||||||    
T  38142214 agtatgtgaaggataacacagtcaggtaagtcgc 38142247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 7976635 - 7976683
Alignment:
Q  20 aaatagcacaattcacaatccttttgagtaggtgaaactccaagcgacc 68  Q
    |||||||| ||||||||||||||||||||| ||||  ||| ||||||||    
T  7976635 aaatagcataattcacaatccttttgagtaagtgaggctctaagcgacc 7976683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 7976853 - 7976905
Alignment:
Q  247 tttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgc 299  Q
    |||||| |||||||| || || ||||||||||||||||| || ||||||||||    
T  7976853 tttggcgttcaaaaaggagagaatgtgaaggataatgcattcgggtaagtcgc 7976905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 297
Target Start/End: Original strand, 33844279 - 33844389
Alignment:
Q  187 aggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcag 286  Q
    ||||| ||||||||| ||||  |||||||||| ||||||||||||||| ||||| ||||||| ||  |||||||| ||||  |||| ||  | |||||||    
T  33844279 aggaatacgtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatgtaaataagaatgcag 33844378  T
Q  287 tcaggtaagtc 297  Q
    || ||||||||    
T  33844379 tcgggtaagtc 33844389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 33840288 - 33840345
Alignment:
Q  188 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgt 245  Q
    |||| ||||||||||||||  |||||||||| |||||||||||||||  |||||||||    
T  33840288 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgt 33840345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 7115536 - 7115624
Alignment:
Q  188 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 276  Q
    |||||||  ||||| |||| |||||||||   ||||||||  ||||| ||||| |||| |||||  ||||||||||| |||||||||||    
T  7115536 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7115624  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 7120608 - 7120696
Alignment:
Q  188 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 276  Q
    |||||||  ||||| |||| |||||||||   ||||||||  ||||| ||||| |||| |||||  ||||||||||| |||||||||||    
T  7120608 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7120696  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 7124012 - 7124100
Alignment:
Q  188 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 276  Q
    |||||||  ||||| |||| |||||||||   ||||||||  ||||| ||||| |||| |||||  ||||||||||| |||||||||||    
T  7124012 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7124100  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 7140758 - 7140814
Alignment:
Q  220 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 276  Q
    ||||||||| ||||| ||||| |||| ||| | |||||||||||| |||||||||||    
T  7140758 ggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaag 7140814  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 8680372 - 8680428
Alignment:
Q  220 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 276  Q
    ||||||||| ||||| ||||| |||| ||| | |||||||||||| |||||||||||    
T  8680372 ggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaag 8680428  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 43864048 - 43864136
Alignment:
Q  187 aggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaa 275  Q
    ||||||||  ||||||||||   |||||||   ||||||||||||||| ||||| || ||||| ||||||||||| |||||||||||||    
T  43864048 aggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggacagtatgtgaa 43864136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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