View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10834_low_6 (Length: 257)
Name: NF10834_low_6
Description: NF10834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10834_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45067480 - 45067242
Alignment:
| Q |
1 |
agctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgttttttggatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45067480 |
agctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgttttttggatg |
45067381 |
T |
|
| Q |
101 |
acaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatataattgctaagaatgtga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45067380 |
acaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatattattgctaagaatgtga |
45067281 |
T |
|
| Q |
201 |
caattgcaggacaacttgacggaatttctaatgaccctt |
239 |
Q |
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| T |
45067280 |
caattgcaggacaacttgacggaatttctaatgaccctt |
45067242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 45075039 - 45074802
Alignment:
| Q |
2 |
gctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgttttttggatga |
101 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||| || || |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45075039 |
gctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttttttggatga |
45074940 |
T |
|
| Q |
102 |
caggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatataattgctaagaatgtgac |
201 |
Q |
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||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| | | ||| ||||||||||| |
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| T |
45074939 |
cagggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtgaaataaattatagagatgttactgccaagaatgtgac |
45074840 |
T |
|
| Q |
202 |
aattgcaggacaacttgacggaatttctaatgaccctt |
239 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||||| |
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| T |
45074839 |
tattgcaggcaaacttgatggaatttctaatgaccctt |
45074802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 45078245 - 45078032
Alignment:
| Q |
26 |
ggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgttttttggatgacaggggcttataagtcacacgctg |
125 |
Q |
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|||||||| || | ||||||||| || ||||||||||||||| ||||||| |||||||||||||| |||||||||||||| ||||| || ||| |
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| T |
45078245 |
ggtagaggtgcttttgtgaaggacattttcgtcaaaggaatggatttgaatacaatgaaatatgtgttttggatgacaggttcttatggagatcatcctg |
45078146 |
T |
|
| Q |
126 |
aaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatataattgctaagaatgtgacaattgcaggacaacttgacggaat |
225 |
Q |
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| || |||||||||||||| |||||||||||||||||||||||||| ||||||||| | | |||||||||||||| ||||| || ||||||| ||||| |
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| T |
45078145 |
ataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtgactattgcgggcaaacttgaaggaat |
45078046 |
T |
|
| Q |
226 |
ttctaatgaccctt |
239 |
Q |
| |
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|||||| ||||||| |
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| T |
45078045 |
ttctaacgaccctt |
45078032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45082566 - 45082328
Alignment:
| Q |
1 |
agctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgttttttggatg |
100 |
Q |
| |
|
||||||||| |||||| | ||||| |||||||| || | ||||||||| || || |||||||||||| ||||||| ||| |||||||||| ||||||||| |
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| T |
45082566 |
agctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttggatg |
45082467 |
T |
|
| Q |
101 |
acaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatataattgctaagaatgtga |
200 |
Q |
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||||| ||||| || |||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||| | | ||||||||||||| |
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| T |
45082466 |
acaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtga |
45082367 |
T |
|
| Q |
201 |
caattgcaggacaacttgacggaatttctaatgaccctt |
239 |
Q |
| |
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| ||||| || || |||| ||||||||||| ||||||| |
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| T |
45082366 |
ctattgcgggcaaagttgaaggaatttctaacgaccctt |
45082328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 34504815 - 34504574
Alignment:
| Q |
1 |
agctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaat---gaaatatgttttttgg |
97 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||| |||||||||||| || || ||||||||| |||| ||||||||||| || |||||| |||||| |
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| T |
34504815 |
agctgttagaatcaaatcagccgtcggtagaggcggatatgtgaaggacatttttgtcaaaggagtgaaattgaacacaatattgagatatgtgttttgg |
34504716 |
T |
|
| Q |
98 |
atgacaggggcttata-agtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatataattgctaagaat |
196 |
Q |
| |
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|||||||| ||||| || | ||| |||| |||||||||||||||||||||||||||||||||| |||||| | | ||||||| | |||||||||||| |
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| T |
34504715 |
ttgacagggtcttatggagac-caccctgataatggatttgatccaaaagcattgcctaaaattactggaattatttttagagatgttattgctaagaat |
34504617 |
T |
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| Q |
197 |
gtgacaattgcaggacaacttgacggaatttctaatgaccctt |
239 |
Q |
| |
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||||| |||| || |||||||| |||||||||||||| |||| |
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| T |
34504616 |
gtgaccgttgcggggcaacttgaaggaatttctaatgatcctt |
34504574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 17584518 - 17584414
Alignment:
| Q |
1 |
agctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgttttttggatg |
100 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||| ||||||||||| | |||||| || | ||||||||| ||||| |||||||||||||| ||||||||| |
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| T |
17584518 |
agctattagaatcaaaactgcagttggtagaggagcatatgtgaaaggtatatttgttagaggaatgaaattgaaaacaatgaaatatgtgttttggatg |
17584419 |
T |
|
| Q |
101 |
acagg |
105 |
Q |
| |
|
||||| |
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|
| T |
17584418 |
acagg |
17584414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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