View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10834_low_8 (Length: 254)
Name: NF10834_low_8
Description: NF10834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10834_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 37809014 - 37809249
Alignment:
| Q |
1 |
aagagttaacctgatttgtcgtatgatatgtaggaaccgagcattataaaatgtattcctcccgcattgaaagaataatataaagttgaagatgatccac |
100 |
Q |
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| T |
37809014 |
aagagttaacctgatttgtcgtatgatatgtaggaaccgagcattataaaatgtattcctcccgcattgaaagaataatataaagttgaagatgacccac |
37809113 |
T |
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| Q |
101 |
tctcttccgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttgttcttctatctcatgattcccttctactaccattacagg |
200 |
Q |
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| T |
37809114 |
tctcttccgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttgttcttctatctcatgattcccttctactaccattaccgg |
37809213 |
T |
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| Q |
201 |
gacactggaaatcaatggttccatgtacctgaataa |
236 |
Q |
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| T |
37809214 |
gacactggaaatcaatggttccatgtacctgaataa |
37809249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 37816428 - 37816661
Alignment:
| Q |
1 |
aagagttaacctgatttgtcgtatgatatgtaggaaccgagcattataaaatgtattcctcccgcattgaaagaataatataaagttgaagatgatccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||| |
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| T |
37816428 |
aagagttaacctgatttgtcgtatgatatgtaggcaccgagcattataaaatgtattcctcctgcattgaaagaataatagaaagtggatgatgatccac |
37816527 |
T |
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| Q |
101 |
tctcttccgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttgttcttctatctcatgattcccttctactaccattacagg |
200 |
Q |
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| T |
37816528 |
tctcttctgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttgttcttctatctcatgattcccttccactaccattattgg |
37816627 |
T |
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| Q |
201 |
gacactggaaatcaatggttccatgtacctgaat |
234 |
Q |
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| T |
37816628 |
gacactagcaatcagaggttccatgtacctgaat |
37816661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 196
Target Start/End: Complemental strand, 19906911 - 19906755
Alignment:
| Q |
40 |
agcattataaaatgtattcctcccgcattgaaagaataatataaagttgaagatgatccactctcttccgacggaaatgcaaatcgagaactataagcaa |
139 |
Q |
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||||| |||||||| || || || |||||||||||||| || || || || || |||||||| ||||| || || || ||||| | ||||| ||||| | |
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| T |
19906911 |
agcataataaaatgaatgcccccagcattgaaagaatagtagaatgtggatgacgatccactttcttcagaggggaacgcaaacctggaactgtaagcca |
19906812 |
T |
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| Q |
140 |
cgaatgtcttgttttcagcttgttcttctatctcatgattcccttctactaccatta |
196 |
Q |
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| T |
19906811 |
caaatgtctggtttctagcctgtttttcaatttcatgatttccttctaccaccatta |
19906755 |
T |
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