View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10835_high_13 (Length: 237)
Name: NF10835_high_13
Description: NF10835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10835_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9168241 - 9168465
Alignment:
| Q |
1 |
cacgtagatgtatccaaatacataggatcgttcttcagttgcttgttacagttcaagtatactacatgctccggcctagaataatcatggaatgcgtatg |
100 |
Q |
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| T |
9168241 |
cacgtagatgtatccacatacataggatcgttcttcagttgcttgctacagttcaagtatactacatgctccggcctagaataatcatggaatgcgtatg |
9168340 |
T |
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| Q |
101 |
gatcccccttgtactcgtaatgactgtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtgcaatcaccttcttctattccaggatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9168341 |
gatcccccttgtactcgtaatgactgtaataacttgtgaaattggttgcggttaagaaatagcgaggaatggtgcaatcaccttcttctattccaggatc |
9168440 |
T |
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| Q |
201 |
aactactctgattgtgtagtttttg |
225 |
Q |
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| T |
9168441 |
aactactctgattgtgtagtttttg |
9168465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 9307031 - 9306932
Alignment:
| Q |
126 |
gtaataacttgtgaaattggttgcggttaagaaatagcgaggaat---ggtgcaatcaccttcttctattccaggatcaactactctgattgtgtagttt |
222 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||| || || |||||||||||||| |||||| ||||||||||||| |||| ||||||| |
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| T |
9307031 |
gtaagaacttgtgaaattggctgcggttaagaaatagcgaggcatggaggagcaatcaccttcttgaattccaagatcaactactctcattgagtagttt |
9306932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 9475491 - 9475390
Alignment:
| Q |
123 |
actgtaataacttgtgaaattggttgcggttaagaaatagcgaggaatgg---tgcaatcaccttcttctattccaggatcaactactctgattgtgtag |
219 |
Q |
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| T |
9475491 |
actgtaataacttgtgaaattggatttggttaagaaataacgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtag |
9475392 |
T |
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| Q |
220 |
tt |
221 |
Q |
| |
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|| |
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| T |
9475391 |
tt |
9475390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 9307156 - 9307086
Alignment:
| Q |
1 |
cacgtagatgtatccaaatacataggatcgttcttcagttgcttgttacagttcaagtatactacatgctc |
71 |
Q |
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|||| ||||||||||| |||| |||||||||||||| ||| ||| ||||||||||||||| ||| ||||| |
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| T |
9307156 |
cacggagatgtatccacgtacagaggatcgttcttcacttgattgctacagttcaagtatattacgtgctc |
9307086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 8924746 - 8924793
Alignment:
| Q |
174 |
gcaatcaccttcttctattccaggatcaactactctgattgtgtagtt |
221 |
Q |
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| T |
8924746 |
gcaatcaccctcttcaattccgggatcaactattctgattgtgtagtt |
8924793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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