View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10835_high_4 (Length: 315)

Name: NF10835_high_4
Description: NF10835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10835_high_4
NF10835_high_4
[»] chr4 (8 HSPs)
chr4 (23-303)||(29676415-29676695)
chr4 (24-241)||(35968306-35968523)
chr4 (24-236)||(36636820-36637032)
chr4 (24-118)||(35974134-35974228)
chr4 (103-231)||(38863107-38863235)
chr4 (54-187)||(36668513-36668646)
chr4 (50-106)||(36607460-36607516)
chr4 (73-236)||(36909544-36909707)
[»] chr5 (2 HSPs)
chr5 (24-241)||(19658216-19658433)
chr5 (24-241)||(19675055-19675272)
[»] chr1 (1 HSPs)
chr1 (24-236)||(42602757-42602969)
[»] chr8 (1 HSPs)
chr8 (133-269)||(35335816-35335952)
[»] chr6 (1 HSPs)
chr6 (155-231)||(33844287-33844363)
[»] chr2 (2 HSPs)
chr2 (173-226)||(43864074-43864127)
chr2 (173-226)||(43875241-43875294)
[»] chr7 (1 HSPs)
chr7 (179-211)||(32413649-32413681)
[»] chr3 (1 HSPs)
chr3 (181-241)||(25596897-25596957)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 29676695 - 29676415
Alignment:
Q  23 aaccaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaa 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29676695 aaccaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtggcaaa 29676596  T
Q  123 tgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676595 tgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaac 29676496  T
Q  223 gacaaaatgcgaagtagaaggcaatccgataagttgcttagcctgtcttcaccttctttgttttcttcctcacagtgcctt 303  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29676495 gacaaaatgcgaagtagaaggcaatccgataagtcgcttagcctgtcttcaccttctttgttttcttcctcacagtgcctt 29676415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 35968523 - 35968306
Alignment:
Q  24 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaat 123  Q
    |||| |||||| || |||||||||| |||||| | | ||||||||||||||||||||||| ||||| |||||  ||| |||||| ||  |||||| |||     
T  35968523 accatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaaaatcttagacacgaacatggcaaattgcttcggagtggaaaaa 35968424  T
Q  124 gttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacg 223  Q
     ||||||| | ||| ||||||||||  ||| ||||||||||||||||  |||| |||||||||| ||||||||||||||| ||||| | || ||| || |    
T  35968423 cttgaagcatacaacataagagttgaaatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttttgtatccaataatg 35968324  T
Q  224 acaaaatgcgaagtagaa 241  Q
    |||||||| |||| ||||    
T  35968323 acaaaatgtgaaggagaa 35968306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 36636820 - 36637032
Alignment:
Q  24 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaat 123  Q
    |||| |||||| ||||||||||||  |||||||||| |||||||||||||||||||| || ||||| || ||  ||| |||||| |||| ||||| ||||    
T  36636820 accatgacggtcaagatcaagagcgtgcagtgcagttgaggtatcacgaagagtcaatatgttagacacaaacatggcaaattgcttaacagtggaaaat 36636919  T
Q  124 gttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacg 223  Q
     |||| || | ||| ||||||||||| ||| ||||||||||||||    ||||||| |||||||  ||||||   || || ||||||| ||||||||| |    
T  36636920 cttgatgcatacaacataagagttggaatacgtttccagagatgtctccatctcttagacaaaacacaagttctgacaacatgtttggtattcaaaaatg 36637019  T
Q  224 acaaaatgcgaag 236  Q
    |||||||| ||||    
T  36637020 acaaaatgtgaag 36637032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 35974228 - 35974134
Alignment:
Q  24 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgg 118  Q
    |||| |||||| || ||||| |||| |||||||| | ||||||||||||||||||||||| ||| | |||||| ||| |||||| ||| ||||||    
T  35974228 accatgacggttaatatcaatagcttgcagtgcaattgaggtatcacgaagagtcaaaatcttatacacgaatatggcaaattgcttacgagtgg 35974134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 231
Target Start/End: Original strand, 38863107 - 38863235
Alignment:
Q  103 aattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacga 202  Q
    |||||||||| ||||| |||| ||||||  ||||| ||||||| ||| ||| ||||| |||||||||   |||||||||||||||  |||||| ||| |     
T  38863107 aattgtttaacagtggaaaatcttgaagaatgcaatataagagatggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttcgaatgg 38863206  T
Q  203 cgtgtttggcattcaaaaacgacaaaatg 231  Q
    | ||||||| ||||||  | |||||||||    
T  38863207 catgtttggtattcaacgatgacaaaatg 38863235  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 187
Target Start/End: Original strand, 36668513 - 36668646
Alignment:
Q  54 tgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggata 153  Q
    |||||| ||| ||||||||||||||||||| ||||| || ||| | | |||||| |||| |  || |||| | ||||  ||||| ||||| ||||  |||    
T  36668513 tgcagttgagctatcacgaagagtcaaaatcttagacacaaatgttgtaaattgcttaacataggaaaatctagaagaatgcaatataagggttgaaata 36668612  T
Q  154 tgtttccagagatgttcatatctcttggacaaaa 187  Q
     ||||||||||||||||  ||||||| |||||||    
T  36668613 cgtttccagagatgttcccatctctttgacaaaa 36668646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 36607460 - 36607516
Alignment:
Q  50 gcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaatt 106  Q
    |||||||| | ||||||||||||||||||||||| || || |||||||||| |||||    
T  36607460 gcagtgcaattgaggtatcacgaagagtcaaaatatttgacacgaatttggtaaatt 36607516  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 236
Target Start/End: Complemental strand, 36909707 - 36909544
Alignment:
Q  73 agagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaatgttgaagcttgcaaaataagagttgggatatgtttccagagatgttcat 172  Q
    ||||||||||| ||||| |||||| | | |||||| |||| ||||| |||| ||||||  || || ||||||||||| ||  | |||||||||||| |      
T  36909707 agagtcaaaatcttagacacgaatgttgtaaattgcttaatagtggaaaatcttgaagaatgtaacataagagttggaattcgcttccagagatgtcccc 36909608  T
Q  173 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaag 236  Q
    |||||||||| ||||  ||||||   ||| | ||||||| |||||| || || |||||| ||||    
T  36909607 atctcttggaaaaaacacaagttccgacggcatgtttggtattcaagaatgataaaatgtgaag 36909544  T

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Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 19658216 - 19658433
Alignment:
Q  24 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaat 123  Q
    |||| |||||| ||||||||| ||  ||| || | | ||||||||||||||||||||||| ||||  ||||||||||||||||| || ||||||| ||||    
T  19658216 accatgacggtcaagatcaagggcgtgcaatgaaattgaggtatcacgaagagtcaaaatcttaggcacgaatttggaaaattgcttcagagtggaaaat 19658315  T
Q  124 gttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacg 223  Q
     | ||||  ||||||||||||||||| ||| ||||||||||||      ||||| |||||||||  |||||||||||| | | ||| || | |||||| |    
T  19658316 ttggaagaatgcaaaataagagttggaataagtttccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatg 19658415  T
Q  224 acaaaatgcgaagtagaa 241  Q
    |||||||| |||| ||||    
T  19658416 acaaaatgtgaaggagaa 19658433  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 19675055 - 19675272
Alignment:
Q  24 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaat 123  Q
    |||| |||||| ||||||||| ||  ||| || | | ||||||||||||||||||||||| ||||  |||||||| |||||||| || ||||||| ||||    
T  19675055 accatgacggtcaagatcaagggcgtgcaatgaaattgaggtatcacgaagagtcaaaatcttaggcacgaatttcgaaaattgcttcagagtggaaaat 19675154  T
Q  124 gttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacg 223  Q
     | ||||  ||||||||||||||||| ||| ||||||||||||      ||||| |||||||||  |||||||||||| | | ||| || | |||||| |    
T  19675155 ttggaagaatgcaaaataagagttggaataagtttccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatg 19675254  T
Q  224 acaaaatgcgaagtagaa 241  Q
    |||||||| |||| ||||    
T  19675255 acaaaatgtgaaggagaa 19675272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 42602757 - 42602969
Alignment:
Q  24 accaggacggtgaagatcaagagctagcagtgcagtcgaggtatcacgaagagtcaaaattttagagacgaatttggaaaattgtttaagagtgggaaat 123  Q
    |||| |||||||||||||||||||  |||||||||| ||||||||||||||||||||||| ||||| || ||| ||||||| || || | |||||||||     
T  42602757 accatgacggtgaagatcaagagcatgcagtgcagttgaggtatcacgaagagtcaaaatcttagacacaaatatggaaaaatgcttcacagtgggaaag 42602856  T
Q  124 gttgaagcttgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacg 223  Q
     |||| |  | ||| |||||||| || ||| ||||||| | | | |   |||| |||||||| |||||||||||||||  ||||||||  || | ||| |    
T  42602857 tttgaggaatccaatataagagtaggaatacgtttccacataagcttccatcttttggacaagatgcaagtttgaacggtgtgtttggagttaagaaatg 42602956  T
Q  224 acaaaatgcgaag 236  Q
    |||||||| ||||    
T  42602957 acaaaatgtgaag 42602969  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 35335952 - 35335816
Alignment:
Q  133 tgcaaaataagagttgggatatgtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgc 232  Q
    ||||| ||||| ||||| ||| ||||||| |||||||   |||| |||||||||| |||||||||||| || ||||||| ||  || || |||||||||     
T  35335952 tgcaatataagtgttggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaacaacttgtttggaatgtaataatgacaaaatgt 35335853  T
Q  233 gaagtagaaggcaatccgataagttgcttagcctgtc 269  Q
    ||||||||| |||||| | |||||  |||| ||||||    
T  35335852 gaagtagaatgcaatcaggtaagtcacttatcctgtc 35335816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 33844287 - 33844363
Alignment:
Q  155 gtttccagagatgttcatatctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatg 231  Q
    |||||||||||||||   ||||  ||||||||||||||||||||||| ||| || ||  |||||||| |||||||||    
T  33844287 gtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatg 33844363  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 43864074 - 43864127
Alignment:
Q  173 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgaca 226  Q
    |||| |||||||||||||||||||||||| | | ||| ||||||||||| ||||    
T  43864074 atcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggaca 43864127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 43875241 - 43875294
Alignment:
Q  173 atctcttggacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgaca 226  Q
    |||| |||||||||||||||||||||||||| | ||| ||||| ||||| ||||    
T  43875241 atcttttggacaaaatgcaagtttgaacgacctcttttgcatttaaaaaggaca 43875294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 32413681 - 32413649
Alignment:
Q  179 tggacaaaatgcaagtttgaacgacgtgtttgg 211  Q
    ||||||||||||||||||||||| |||||||||    
T  32413681 tggacaaaatgcaagtttgaacggcgtgtttgg 32413649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 25596957 - 25596897
Alignment:
Q  181 gacaaaatgcaagtttgaacgacgtgtttggcattcaaaaacgacaaaatgcgaagtagaa 241  Q
    ||||||||||||||||||||| | |  |||| ||||||||| ||||||||| |||| ||||    
T  25596957 gacaaaatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaagaagaa 25596897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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