View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10835_low_1 (Length: 483)

Name: NF10835_low_1
Description: NF10835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10835_low_1
NF10835_low_1
[»] chr3 (2 HSPs)
chr3 (16-366)||(24837492-24837844)
chr3 (424-461)||(24837397-24837434)
[»] chr4 (4 HSPs)
chr4 (303-366)||(28110678-28110741)
chr4 (312-350)||(27844220-27844258)
chr4 (424-461)||(28110799-28110836)
chr4 (424-452)||(15559214-15559242)
[»] chr5 (1 HSPs)
chr5 (303-359)||(36532146-36532202)
[»] chr1 (2 HSPs)
chr1 (303-366)||(6516235-6516298)
chr1 (312-350)||(45218701-45218739)
[»] chr2 (3 HSPs)
chr2 (303-366)||(21427905-21427968)
chr2 (309-359)||(34326715-34326766)
chr2 (312-350)||(21647403-21647441)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 366
Target Start/End: Complemental strand, 24837844 - 24837492
Alignment:
Q  16 gaccaaaagccaccgtaatcagtaagttaccttacctcgagtggatgcagaatgcgattggtggtttgagaaaaccagttgcacgtctaagagtgaagga 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24837844 gaccaaaagccaccgtaatcagtaagttaccttacctcgagtcgatgcagaatgcgattggtggtttgagaaaaccagttgcacgtctaagagtgaagga 24837745  T
Q  116 gaggtgaaagagtgtgggagttccagtaagagaggactgcagcagcaccaagagttcctcaatatttagcttttcacagttggtcatcatagtgatcatg 215  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24837744 gaggtgaaagagtgtggtagttccagtatgagaggactgcagcagcaccaagagttcctcaatatttagcttttcacagttggtcatcatagtgatcatg 24837645  T
Q  216 atgcactcaattatagacatttagccctaattagaaaaatggccactttgcaccattatcttcaagaaatatc--ttcnnnnnnnnnnngaaactgcgaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||            |||||||||||    
T  24837644 atgcactcaattatagacatttagccctaattagaaaaatggccactttgcaccattatcttcaagaaatatcttttttttttttttttgaaactgcgaa 24837545  T
Q  314 atattattcacgtcgagaatgtgcaagacgcacaaaactcgcggccgagacaa 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24837544 atattattcacgtcgagaatgtgcaagacgcacaaaactcgcggccgagacaa 24837492  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 461
Target Start/End: Complemental strand, 24837434 - 24837397
Alignment:
Q  424 cccagccacaccacgcagggagggaaaaacagacccat 461  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24837434 cccagccacaccacgcagggagggaaaaacagacccat 24837397  T

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Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 28110678 - 28110741
Alignment:
Q  303 gaaactgcgaaatattattcacgtcgagaatgtgcaagacgcacaaaactcgcggccgagacaa 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28110678 gaaactgcgaaatattattcacgtcgagaatgtgcaagacgcacaaaactcgcggccgagacaa 28110741  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 27844258 - 27844220
Alignment:
Q  312 aaatattattcacgtcgagaatgtgcaagacgcacaaaa 350  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27844258 aaatattattcacgtcgagaatgtgcaagacgcacaaaa 27844220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 461
Target Start/End: Original strand, 28110799 - 28110836
Alignment:
Q  424 cccagccacaccacgcagggagggaaaaacagacccat 461  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28110799 cccagccacaccacgcagggagggaaaaacagacccat 28110836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 452
Target Start/End: Complemental strand, 15559242 - 15559214
Alignment:
Q  424 cccagccacaccacgcagggagggaaaaa 452  Q
    |||||||||||||||||||||||||||||    
T  15559242 cccagccacaccacgcagggagggaaaaa 15559214  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 359
Target Start/End: Complemental strand, 36532202 - 36532146
Alignment:
Q  303 gaaactgcgaaatattattcacgtcgagaatgtgcaagacgcacaaaactcgcggcc 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36532202 gaaactgcgaaatattattcacgtcgagaatgtgcaagacgcacaaaactcgcggcc 36532146  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 6516235 - 6516298
Alignment:
Q  303 gaaactgcgaaatattattcacgtcgagaatgtgcaagacgcacaaaactcgcggccgagacaa 366  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  6516235 gaaactgcgaaatattattcacgttgagaatgtgcaagacgcacaaaactcgcggcagagacaa 6516298  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 45218739 - 45218701
Alignment:
Q  312 aaatattattcacgtcgagaatgtgcaagacgcacaaaa 350  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  45218739 aaattttattcacgtcgagactgtgcaagacgcacaaaa 45218701  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 21427905 - 21427968
Alignment:
Q  303 gaaactgcgaaatattattcacgtcgagaatgtgcaagacgcacaaaactcgcggccgagacaa 366  Q
    ||||| || ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  21427905 gaaacagcaaaatattattcgcgtcgagaatgtgcaagacgcacaaaactcgtggccgagacaa 21427968  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 34326766 - 34326715
Alignment:
Q  309 gcgaaatattattcacgtcgagaatgtgcaagacgcac-aaaactcgcggcc 359  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||||||||    
T  34326766 gcgaaattttattcacgtcgagattgtgcaagacgcacaaaaactcgcggcc 34326715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 21647403 - 21647441
Alignment:
Q  312 aaatattattcacgtcgagaatgtgcaagacgcacaaaa 350  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  21647403 aaatattattcacgtcgagaatatgcaagacgcagaaaa 21647441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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