View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10835_low_10 (Length: 298)
Name: NF10835_low_10
Description: NF10835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10835_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 35348838 - 35348556
Alignment:
| Q |
15 |
ataatgagtaaaaatttagaccattgttggtggccatcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35348838 |
ataatgagtaaaaatttagaccattgttggtggccatcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaat |
35348739 |
T |
|
| Q |
115 |
cacttttttctagagaaatacttagtcaaccctcctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35348738 |
cacttttttctagagaaatacttagtcaaccctcctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaa |
35348639 |
T |
|
| Q |
215 |
gctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagttcaatgaaaatttaagtttcatct |
297 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35348638 |
gctgaaaaatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagttcaatgaaaatttaagtttcatct |
35348556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 2275915 - 2275633
Alignment:
| Q |
15 |
ataatgagtaaaaatttagaccattgttggtggccatcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2275915 |
ataatgagtaaaaatttagaccattgttggtggccatcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaat |
2275816 |
T |
|
| Q |
115 |
cacttttttctagagaaatacttagtcaaccctcctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2275815 |
cacttttttctagagaaatacttagtcaaccctcctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaa |
2275716 |
T |
|
| Q |
215 |
gctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagttcaatgaaaatttaagtttcatct |
297 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2275715 |
gctgaaaaatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagttcaatgaaaatttaagtttcatct |
2275633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 39347406 - 39347124
Alignment:
| Q |
15 |
ataatgagtaaaaatttagaccattgttggtggccatcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39347406 |
ataatgagtaaaaatttagaccattgttggtggccatcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaat |
39347307 |
T |
|
| Q |
115 |
cacttttttctagagaaatacttagtcaaccctcctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39347306 |
cacttttttctagagaaatacttagtcaaccctcctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaa |
39347207 |
T |
|
| Q |
215 |
gctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagttcaatgaaaatttaagtttcatct |
297 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39347206 |
gctgaaaaatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagttcaatgaaaatttaagtttcatct |
39347124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 4013249 - 4012967
Alignment:
| Q |
15 |
ataatgagtaaaaatttagaccattgttggtggccatcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4013249 |
ataatgagtaaaaatttagaccattgttggtggccatcatcaaatggagagaacactaaatgtcataagttcttcaaaaatcatgactactacccacaat |
4013150 |
T |
|
| Q |
115 |
cacttttttctagagaaatacttagtcaaccctcctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4013149 |
cacttttttctagagaaatacttagtcaaccctcctctttcataagttcataggaaatatgtcttaaaatgagcacatgaaaagggtttgttttagtcaa |
4013050 |
T |
|
| Q |
215 |
gctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagttcaatgaaaatttaagtttcatct |
297 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4013049 |
gctgaaaaatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagttcaatgaaaatttaagtttcatct |
4012967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 79 - 297
Target Start/End: Complemental strand, 25880049 - 25879831
Alignment:
| Q |
79 |
ataagttcttcaaaaatcatgactactacccacaatcacttttttctagagaaatacttagtcaaccctcctctttcataagttcataggaaatatgtct |
178 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25880049 |
ataagttcttcaaaaatcatgactactactcacattcacttttttctagagaaatacttagtcaaacctcctctttcataagttcataggaaatatgtct |
25879950 |
T |
|
| Q |
179 |
taaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagttcaat |
278 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
25879949 |
taaaatgggcacatgaaaagggtttcttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattagtgcaagttcaat |
25879850 |
T |
|
| Q |
279 |
gaaaatttaagtttcatct |
297 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
25879849 |
gaaaattaaagtttcatct |
25879831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 25880140 - 25880077
Alignment:
| Q |
14 |
aataatgagtaaaaatttagaccattgttggtggccatcatcaaatggagagaacactaaatgt |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25880140 |
aataatgagtaaaaatttagaccattgttggtggccatcatcaaatggagagaacactaaatgt |
25880077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 75 - 297
Target Start/End: Original strand, 10789346 - 10789569
Alignment:
| Q |
75 |
tgtcataagttcttcaaaaatcatgactactacccacaatcactttt-ttctagagaaatacttagtcaaccctcctctttcataagttcataggaaata |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10789346 |
tgtcataagttcttcaaaaatcatgactactacccacattcactttttttctagagaaatacttagtcaaacctcctctttcataagttcataggaaata |
10789445 |
T |
|
| Q |
174 |
tgtcttaaaatgagcacatgaaaagggtttgttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattactgcaagt |
273 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10789446 |
tgtcttaaaatgggcacatgaaaaaggtttcttttagtcaagctgaaacatatttaacctgtgcaatttgagatatattcatcaattcattagtgcaagt |
10789545 |
T |
|
| Q |
274 |
tcaatgaaaatttaagtttcatct |
297 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
10789546 |
tcaatgaaaattaaagtttcatct |
10789569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 10789258 - 10789321
Alignment:
| Q |
14 |
aataatgagtaaaaatttagaccattgttggtggccatcatcaaatggagagaacactaaatgt |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10789258 |
aataatgagtaaaaatttagaccattgttggtggccatcatcaaatggagagaacactaaatgt |
10789321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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