View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10835_low_11 (Length: 295)
Name: NF10835_low_11
Description: NF10835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10835_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 10968788 - 10969065
Alignment:
| Q |
1 |
caagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaataatctggcacagttgtggaagcagaagaagcaacct |
100 |
Q |
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| T |
10968788 |
caagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaataatctggcacagttgtggaagcagaagaagcaacct |
10968887 |
T |
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| Q |
101 |
agtatggcgaattgattaacaaaagattgtaatgttatagggatattgtttgccccaatcacaagttgttttattgtctaaaaaatattaaatttaagaa |
200 |
Q |
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| T |
10968888 |
agtatggcgaattgattaacaaaagattgtaatgttatagggatattgtttgccccaatcacaagttgttttattgtctaaaaaatattaaatttaagaa |
10968987 |
T |
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| Q |
201 |
tnnnnnnntggtttagaaattgtgattcaaatacctcggtaggatttgtggattggtaatggtgtagaaatttgtatt |
278 |
Q |
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| T |
10968988 |
taaaaaaatggtttagaaattgtgattcaaatacctcggtaggatttgtggattggtaatggtgtagaaatttgtatt |
10969065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 10982738 - 10982827
Alignment:
| Q |
1 |
caagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaataatctggcacagttgtggaagcagaa |
90 |
Q |
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| T |
10982738 |
caagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcccttgtcgctttgaataagttggctcagttgtggaagcagaa |
10982827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 11019353 - 11019411
Alignment:
| Q |
5 |
atgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaa |
63 |
Q |
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| T |
11019353 |
atgaaaataagtgctaaggaggcaagaggaggaggtggatcttctcttgttgatttgaa |
11019411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 11080110 - 11080171
Alignment:
| Q |
2 |
aagatgaaaataagtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaa |
63 |
Q |
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| T |
11080110 |
aagatgaaaataagtgctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaa |
11080171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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