View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10835_low_15 (Length: 254)

Name: NF10835_low_15
Description: NF10835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10835_low_15
NF10835_low_15
[»] chr8 (8 HSPs)
chr8 (1-249)||(32166643-32166890)
chr8 (1-186)||(33897618-33897804)
chr8 (1-178)||(35574648-35574827)
chr8 (91-179)||(29969153-29969241)
chr8 (93-143)||(6803876-6803926)
chr8 (1-57)||(6630547-6630603)
chr8 (93-184)||(6630316-6630406)
chr8 (1-48)||(12736074-12736121)
[»] chr7 (15 HSPs)
chr7 (1-186)||(34891414-34891600)
chr7 (1-186)||(3191575-3191760)
chr7 (16-178)||(31171316-31171480)
chr7 (1-178)||(42012690-42012867)
chr7 (1-178)||(31152739-31152919)
chr7 (1-68)||(32138894-32138961)
chr7 (1-57)||(32962399-32962455)
chr7 (1-48)||(23944096-23944143)
chr7 (21-140)||(22593597-22593722)
chr7 (13-171)||(8900670-8900831)
chr7 (1-53)||(34891380-34891432)
chr7 (93-184)||(33362347-33362436)
chr7 (14-52)||(7463864-7463902)
chr7 (32-68)||(27651379-27651415)
chr7 (16-68)||(29152350-29152402)
[»] chr5 (13 HSPs)
chr5 (2-179)||(7113623-7113804)
chr5 (91-179)||(2243249-2243335)
chr5 (1-177)||(40483739-40483917)
chr5 (91-192)||(17739908-17740009)
chr5 (1-65)||(2243324-2243388)
chr5 (1-65)||(14138548-14138612)
chr5 (1-68)||(973111-973178)
chr5 (14-52)||(972845-972883)
chr5 (19-68)||(7215322-7215371)
chr5 (92-192)||(7215230-7215329)
chr5 (13-57)||(37077663-37077707)
chr5 (82-197)||(39730369-39730484)
chr5 (1-52)||(39808240-39808291)
[»] chr4 (10 HSPs)
chr4 (10-186)||(25234217-25234393)
chr4 (14-192)||(25062361-25062544)
chr4 (4-113)||(15131586-15131698)
chr4 (25-142)||(54000079-54000199)
chr4 (1-62)||(4115391-4115452)
chr4 (93-186)||(55897600-55897693)
chr4 (1-57)||(20512835-20512891)
chr4 (10-52)||(54000233-54000275)
chr4 (91-184)||(22050903-22050995)
chr4 (1-69)||(22050851-22050919)
[»] chr2 (13 HSPs)
chr2 (1-186)||(13712758-13712945)
chr2 (1-178)||(9050133-9050313)
chr2 (1-68)||(16576248-16576315)
chr2 (16-178)||(38576791-38576955)
chr2 (3-65)||(16863459-16863521)
chr2 (89-146)||(38576707-38576764)
chr2 (108-178)||(9931337-9931406)
chr2 (1-46)||(2909844-2909889)
chr2 (94-178)||(25606423-25606506)
chr2 (14-57)||(34176654-34176697)
chr2 (93-186)||(28282699-28282791)
chr2 (16-68)||(28282824-28282876)
chr2 (1-57)||(38576945-38577001)
[»] chr3 (8 HSPs)
chr3 (1-154)||(39341110-39341266)
chr3 (13-151)||(42091811-42091951)
chr3 (1-67)||(46303371-46303437)
chr3 (91-192)||(54437848-54437949)
chr3 (12-69)||(31758242-31758298)
chr3 (93-150)||(39341283-39341340)
chr3 (14-68)||(54437806-54437860)
chr3 (1-57)||(48646423-48646478)
[»] chr6 (10 HSPs)
chr6 (1-150)||(20068000-20068152)
chr6 (1-68)||(32342600-32342667)
chr6 (1-99)||(23577118-23577218)
chr6 (1-48)||(32047194-32047241)
chr6 (19-65)||(20206481-20206527)
chr6 (19-65)||(22100504-22100550)
chr6 (91-146)||(32047262-32047317)
chr6 (121-175)||(23577068-23577121)
chr6 (94-140)||(26236751-26236797)
chr6 (6-67)||(23577009-23577070)
[»] chr1 (13 HSPs)
chr1 (13-68)||(10775163-10775218)
chr1 (1-68)||(46080971-46081038)
chr1 (1-115)||(7997197-7997314)
chr1 (1-68)||(34601449-34601516)
chr1 (16-105)||(44342055-44342145)
chr1 (91-184)||(3232179-3232271)
chr1 (99-184)||(7104316-7104400)
chr1 (15-68)||(42819621-42819674)
chr1 (1-57)||(52432672-52432728)
chr1 (106-195)||(49897909-49897998)
chr1 (106-179)||(67982-68054)
chr1 (133-192)||(68139-68198)
chr1 (1-68)||(12144970-12145034)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-52)||(36981-37033)
[»] scaffold0047 (1 HSPs)
scaffold0047 (10-57)||(62744-62791)
[»] scaffold1743 (1 HSPs)
scaffold1743 (1-57)||(794-850)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 32166643 - 32166890
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaactatcgatgagcatacatttttccttgatgaa 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32166643 tgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgataattgatagtaagaaaaactatcgatgagcatacatttttctttgatgaa 32166742  T
Q  101 ttgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataagaagttcgaagaaa 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32166743 ttgggtgtaatttacctctaatgacaagtacgattcgattttggaacg-aaagagatgtaaatcacatgttaaatgaagaagataagaaattcgaagaaa 32166841  T
Q  201 cactttgattggaagcagctatgtaagaaaaaaccacattcatatattg 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32166842 cactttgattggaagcagctatgtaagaaaaaaccacattcatatattg 32166890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 33897804 - 33897618
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaa-gaaaaac-tatcgatgagcatacatttttccttgatg 98  Q
    |||||||| ||||| || ||||| ||||||||| || ||||||||||  ||||||||||||| ||||||  |||||| |||| ||||||||||||||||     
T  33897804 tgttgaatgaaggaaattaagaattttgatgtttttgagatgaaaatagtaattgatagtaaagaaaaatatatcgacgagcctacatttttccttgatt 33897705  T
Q  99 aattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 186  Q
    ||||| | ||||||||| ||| |||| ||  |||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  33897704 aattgagagtaatttacatctgatgataaacacgattagattttagaacgaaaa-agatgtaaatcacatgttaaatgaaggagataa 33897618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 35574648 - 35574827
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac--tatcgatgagca-tacatttttccttgat 97  Q
    |||||||| || |||||||| || |||||||||||||||||||||||  ||| | || |||||||||||  |||| |||||   | |||| ||| |||||    
T  35574648 tgttgaatgaatgagatgaaaaaatttgatgttcttaagatgaaaatcgtaactaattgtaagaaaaaccctatcaatgaggtctccattattcattgat 35574747  T
Q  98 gaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 178  Q
    |||||| |||||||||||| |||||||||| || ||||||||||||||||| ||||||||  |||||| ||||| ||||||    
T  35574748 gaattgagggtaatttaccgctaatgacaactatgattcgattttggaacg-aaagagattaaaatcatatgttcaatgaa 35574827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 29969241 - 29969153
Alignment:
Q  91 ccttgatgaattgggggtaatttacctct-aatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaag 179  Q
    ||||||||||||| || ||||||||| || |||||||||||  |||||||| ||||||| ||||||||| | |||||||||| |||||||    
T  29969241 ccttgatgaattgtggataatttaccccttaatgacaagtagaattcgattatggaacg-aaagagatgaatatcacatgttgaatgaag 29969153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 6803876 - 6803926
Alignment:
Q  93 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttg 143  Q
    ||||||||||||| |||||||||| ||||||||||||| |||| |||||||    
T  6803876 ttgatgaattgggagtaatttacccctaatgacaagtaggatttgattttg 6803926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 6630547 - 6630603
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 57  Q
    |||| ||| |||||||||||||| ||| ||| |||||||||||||||| ||||||||    
T  6630547 tgttaaatgaaggagatgaagaaatttaatgatcttaagatgaaaatggtaattgat 6630603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 6630316 - 6630406
Alignment:
Q  93 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 184  Q
    ||||||||||| | |||||||||| ||||||||||||| |||| ||||||| || | || |||||| | | |||||||| |||||| |||||    
T  6630316 ttgatgaattgagagtaatttacccctaatgacaagtaggatttgattttgaaatg-aaggagatggataacacatgttgaatgaaaaagat 6630406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 12736121 - 12736074
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 48  Q
    |||||||  |||||||||||||||||||||||| |||||||| |||||    
T  12736121 tgttgaacgaaggagatgaagaagtttgatgttattaagatggaaatg 12736074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 34891600 - 34891414
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcatacatttttccttgat 97  Q
    |||||||| |||||||||||||| |||||||||||| |||| |||||||||| | |||||||||||||    ||||| ||||| || ||| |||||||||    
T  34891600 tgttgaatgaaggagatgaagaaatttgatgttcttgagatcaaaatgataactaatagtaagaaaaaaccatatcggtgagcctatattcttccttgat 34891501  T
Q  98 gaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 186  Q
    ||| | ||||||||||||| || ||||||| ||| ||||||||| |||| | |||||||| || |||||||||||||||||||||||||    
T  34891500 gaact-ggggtaatttacccctcatgacaaatacaattcgatttgggaatg-aaagagatctagatcacatgttaaatgaagaagataa 34891414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 3191575 - 3191760
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaaga-aaaactatcgatgagcatacatttttccttgatga 99  Q
    ||||||||||||||||||||||| ||||||||| || |||||||||  |||| ||||||||| | ||||  ||   ||||  ||||||||||||  |||     
T  3191575 tgttgaataaaggagatgaagaactttgatgtttttgagatgaaaagaataactgatagtaaaagaaaatcatatgtgagtctacatttttcctccatgt 3191674  T
Q  100 attgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 186  Q
    ||||| |||||||||||  | ||| ||| |||||||| |||||| || | |||| |||||||||||||| |||||||||| ||||||    
T  3191675 attggcggtaatttacccttcatgtcaaatacgattcaattttgaaatg-aaagggatgtaaatcacatcttaaatgaaggagataa 3191760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 31171316 - 31171480
Alignment:
Q  16 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaactatc--gatga-gcatacatttttccttgatgaattgggggtaatt 112  Q
    ||||||||| |||||||| |||||||||||||| |||||| | ||||||||||| |    ||||| |  |||||| |  |||||||||||||||||||||    
T  31171316 atgaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaaaccaaaatgatgaagtctacattatcacttgatgaattgggggtaatt 31171415  T
Q  113 tacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 178  Q
    ||||| |||| ||||||| ||||||||| || |||| ||||||||| ||||||||| || ||||||    
T  31171416 tacctataataacaagtaggattcgattatgaaacg-aaagagatggaaatcacattttgaatgaa 31171480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 42012867 - 42012690
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac---tatcgatgagcatacatttttccttgat 97  Q
    |||||||||||  ||||||| |||||||||||||||  ||| ||| || ||| ||||  |||||||||    ||| ||||| | ||||||||||||||||    
T  42012867 tgttgaataaat-agatgaaaaagtttgatgttcttgtgataaaagtggtaactgattctaagaaaaaaccatattgatgaacttacatttttccttgat 42012769  T
Q  98 gaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 178  Q
     |||||||| ||||||| | || ||||||  || ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  42012768 taattgggg-taatttatccctcatgacatatatgattcgattttggaacgaaaa-agatgtaaatcacatcttaaatgaa 42012690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 31152739 - 31152919
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaact---atcgatga-gcatacatttttccttga 96  Q
    |||||||| || || ||||||||| |||||||| |||||||||||||| |||||| | ||| ||||||     |  ||||| |  |||||| |  |||||    
T  31152739 tgttgaatgaaagaaatgaagaagattgatgtttttaagatgaaaatggtaattggttgtatgaaaaaaccaaaatgatgaagtctacattatcacttga 31152838  T
Q  97 tgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 178  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||| || |||| ||||||||| | ||||||| || ||||||    
T  31152839 tgaattgggggtaatttacctataataacaagtaggattcgattatgaaacg-aaagagatggagatcacattttgaatgaa 31152919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 32138894 - 32138961
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 68  Q
    |||||||  |||||||||||||| |||||||||||||||||||||||| ||||||||  |||||||||    
T  32138894 tgttgaacgaaggagatgaagaattttgatgttcttaagatgaaaatggtaattgattttaagaaaaa 32138961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32962399 - 32962455
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 57  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||    
T  32962399 tgttgaataaaggagatgaaaaagtttgattttcttaaaatgaatatgataattgat 32962455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23944143 - 23944096
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 48  Q
    |||||||| || |||| |||||||||||||||||||||||||||||||    
T  23944143 tgttgaatgaaagagaagaagaagtttgatgttcttaagatgaaaatg 23944096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 22593597 - 22593722
Alignment:
Q  21 gaagtttgatgttcttaagatgaaaatgataattgatagt-aagaaaaa-----ctatcgatgag-catacatttttccttgatgaattgggggtaattt 113  Q
    |||||||||||||||| |||||||||||| ||||||| || ||||||||      |||||||||| | ||||||   | || ||||||||| ||||||||    
T  22593597 gaagtttgatgttcttgagatgaaaatgacaattgattgtaaagaaaaaaaatcttatcgatgagacctacattacccattaatgaattggaggtaattt 22593696  T
Q  114 acctctaatgacaagtacgattcgatt 140  Q
    ||| |||||||||| ||||||||||||    
T  22593697 acc-ctaatgacaattacgattcgatt 22593722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 8900670 - 8900831
Alignment:
Q  13 gagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaactatcgatg----agcatacatttttccttgatgaattgggggt 108  Q
    |||||||||||||||| ||||||| |||| |||||| ||||| || ||||||||||  |   |||    ||| |||||| | | |||||||||| |||||    
T  8900670 gagatgaagaagtttgttgttcttgagataaaaatggtaatttattgtaagaaaaaacaaaaatgttgaagcctacattatccattgatgaatt-ggggt 8900768  T
Q  109 aatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgtt 171  Q
    |||||| | ||||| |||||||  |||||||| || ||| |||| | ||||| ||||||||||    
T  8900769 aatttatccctaataacaagtagaattcgattatgaaacaaaaaaaaatgtagatcacatgtt 8900831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34891432 - 34891380
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataat 53  Q
    |||| ||| ||| |||| |||||||||||||||||||| ||||||||||||||    
T  34891432 tgttaaatgaagaagataaagaagtttgatgttcttaatatgaaaatgataat 34891380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 33362347 - 33362436
Alignment:
Q  93 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 184  Q
    ||||||| || ||||||| |||| |||||||  || || ||||||||||| |||| ||||||| ||||||||||||||| ||||||| ||||    
T  33362347 ttgatgagttaggggtaagttac-tctaatggtaaatatgattcgattttagaac-aaaagagttgtaaatcacatgttgaatgaaggagat 33362436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 7463902 - 7463864
Alignment:
Q  14 agatgaagaagtttgatgttcttaagatgaaaatgataa 52  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  7463902 agatgaagaagtttgatgttcttcaaatgaaaatgataa 7463864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 27651379 - 27651415
Alignment:
Q  32 ttcttaagatgaaaatgataattgatagtaagaaaaa 68  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  27651379 ttcttgagatgaaaatgataattgattgtaagaaaaa 27651415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 29152350 - 29152402
Alignment:
Q  16 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 68  Q
    |||||||||||||||||| || ||||||||||  ||| |||| ||||||||||    
T  29152350 atgaagaagtttgatgttattgagatgaaaatagtaactgattgtaagaaaaa 29152402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 7113623 - 7113804
Alignment:
Q  2 gttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa--ctat--cgatgagcatacatttttccttgat 97  Q
    ||||||| || ||||||||||||||| || ||||| |||||||||||||||||||| |||| |||||  ||||  ||| || | ||||||||||||||||    
T  7113623 gttgaatgaatgagatgaagaagtttaatattcttgagatgaaaatgataattgatggtaaaaaaaatactataccgacgaacctacatttttccttgat 7113722  T
Q  98 gaattg-ggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaag 179  Q
    |||||| ||||||||||||| || ||| ||| |||||||| ||| |||||| |||||||||||||||||||| ||||||||||    
T  7113723 gaattgaggggtaatttaccgctgatgtcaaatacgattcaattatggaac-aaaagagatgtaaatcacatcttaaatgaag 7113804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 2243249 - 2243335
Alignment:
Q  91 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaag 179  Q
    |||||||||||||||| |||||||||||||||||||||||  |||||||| | ||||||| | ||||| | |||||||||| |||||||    
T  2243249 ccttgatgaattgggg-taatttacctctaatgacaagtaaaattcgattctagaacgaaga-agatggagatcacatgttgaatgaag 2243335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 40483917 - 40483739
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa--ctatcgatgag-catacatttttccttgat 97  Q
    |||||| ||||| ||||||||||||| ||||||||| | || ||  ||  ||||||| ||| ||||||  ||||||||||| | ||  || |  ||||||    
T  40483917 tgttgagtaaagaagatgaagaagttggatgttcttgatataaatttgggaattgattgtacgaaaaaacctatcgatgaggcctatgttatctcttgat 40483818  T
Q  98 gaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatga 177  Q
    |||||| |||||| ||||| | ||||| ||||| ||||||||||||||||| || |||||| | |||||||||| |||||    
T  40483817 gaattgagggtaaattacccccaatgataagtatgattcgattttggaacg-aatgagatgaagatcacatgttgaatga 40483739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 17740009 - 17739908
Alignment:
Q  91 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat-aagaa 189  Q
    ||||||||||||| | | |||| | | ||||| | ||||| ||||||||| |||||||||  |||||| ||||||||||||||||||||||||| |||||    
T  17740009 ccttgatgaattgagtgaaattcatccctaataataagtaggattcgattctggaacgaag-gagatgaaaatcacatgttaaatgaagaagatgaagaa 17739911  T
Q  190 gtt 192  Q
    |||    
T  17739910 gtt 17739908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2243324 - 2243388
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 65  Q
    |||||||| ||||| ||||||||||||||||||||| ||||||||||| ||| | || |||||||    
T  2243324 tgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaactaattgtaagaa 2243388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14138612 - 14138548
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 65  Q
    |||||||| || |||||||  ||||||||| ||||||||||||||||| |||||||| |||||||    
T  14138612 tgttgaatgaaagagatgagaaagtttgatattcttaagatgaaaatggtaattgattgtaagaa 14138548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 973178 - 973111
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 68  Q
    ||||||||||||||||||||||| ||| ||||| || |||| |||||||||| | || ||||||||||    
T  973178 tgttgaataaaggagatgaagaaatttaatgtttttgagataaaaatgataactaattgtaagaaaaa 973111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 972883 - 972845
Alignment:
Q  14 agatgaagaagtttgatgttcttaagatgaaaatgataa 52  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  972883 agatgaagaagtttgatgttcttgagatgaaaatgataa 972845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 7215322 - 7215371
Alignment:
Q  19 aagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 68  Q
    |||||||||||||||||| ||||||||||| || ||||| ||||||||||    
T  7215322 aagaagtttgatgttcttgagatgaaaatggtagttgattgtaagaaaaa 7215371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 7215230 - 7215329
Alignment:
Q  92 cttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataagaagt 191  Q
    |||| |||||| |||||||||||||  |||||| || || ||||| ||||| ||| ||||| ||||| | ||||||| || ||||||||||| |||||||    
T  7215230 cttgttgaattcggggtaatttaccgttaatgataaatatgattcaattttagaatgaaaa-agatggagatcacatattcaatgaagaagaaaagaagt 7215328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 37077707 - 37077663
Alignment:
Q  13 gagatgaagaagtttgatgttcttaagatgaaaatgataattgat 57  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||    
T  37077707 gagatgaagaagtttaatgttcttgagatgaaaatgataactgat 37077663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 39730369 - 39730484
Alignment:
Q  82 tacatttttccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaa 181  Q
    |||||||||| |  ||||||||  ||||||||||| || ||||||  ||| |||||||||||||||| || |||||||| || |||| ||  |||||| |    
T  39730369 tacatttttcttgaatgaattgatggtaatttacccctcatgacatatacaattcgattttggaacg-aacgagatgtatattacatcttcgatgaagga 39730467  T
Q  182 gat-aagaagttcgaag 197  Q
    ||| |||||||||||||    
T  39730468 gataaagaagttcgaag 39730484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39808240 - 39808291
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataa 52  Q
    |||| ||| ||||||||||| |||||||||| ||||||| ||||||||||||    
T  39808240 tgttaaatgaaggagatgaaaaagtttgatggtcttaaggtgaaaatgataa 39808291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 25234217 - 25234393
Alignment:
Q  10 aaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac-tatcgatgagcatacatttttccttgatgaattgggggt 108  Q
    ||||| || ||||| |||||||||||| ||||||||||| ||| ||||  |||||||| | |||| |||||| |||||||||||||||||||||  ||||    
T  25234217 aaggatattaagaaatttgatgttcttgagatgaaaatggtaactgatgctaagaaaaccatatcaatgagcctacatttttccttgatgaattacgggt 25234316  T
Q  109 aatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 186  Q
    |||||||| || ||||||| ||||||||||||||||||||  ||||| | |||||||||  |||||||||| ||||||    
T  25234317 aatttaccgctcatgacaaatacgattcgattttggaacg-taagaggtataaatcacaccttaaatgaaggagataa 25234393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 25062544 - 25062361
Alignment:
Q  14 agatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaact----atcgatga-gcatacatttttccttgatgaattgggggt 108  Q
    ||||||||||||||||| ||||| ||||||||| | |||||||| ||||||||||      || | ||| || |||||| ||||||||||||||| ||||    
T  25062544 agatgaagaagtttgatattcttgagatgaaaacggtaattgattgtaagaaaaaaaccaaattggtgaagcctacattattccttgatgaattgagggt 25062445  T
Q  109 aatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat-aagaagtt 192  Q
    |||||||| ||||| ||||||| |||| |||| |||||| ||| |||||| | |||||||||| ||||||| |||| ||||||||    
T  25062444 aatttacccctaataacaagtaggatttgattatggaac-aaaggagatgaagatcacatgtttaatgaagcagatgaagaagtt 25062361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 15131586 - 15131698
Alignment:
Q  4 tgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcatacatttttccttgatgaa 100  Q
    ||||| |||||||||||||| |||||||||||| |||| |||||| ||| |||||||||||||||    ||||||||||| ||||||  | |||||||||    
T  15131586 tgaatgaaggagatgaagaaatttgatgttcttgagataaaaatggtaactgatagtaagaaaaaaccatatcgatgagcctacattaattcttgatgaa 15131685  T
Q  101 ttgggggtaattt 113  Q
    ||  |||||||||    
T  15131686 ttaagggtaattt 15131698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 54000079 - 54000199
Alignment:
Q  25 tttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcatacatttttccttgatgaattgggggtaatttacctctaa 121  Q
    |||||||||||| ||||||||||| |||||||||||||||||||    |||||||||   |||||||||  || ||||| || | |||||||||   | |    
T  54000079 tttgatgttcttgagatgaaaatggtaattgatagtaagaaaaaaccatatcgatgaatctacattttttttttatgaactgagtgtaatttactcgtca 54000178  T
Q  122 tgacaagtacgattcgatttt 142  Q
    |||||| ||||||||||||||    
T  54000179 tgacaaatacgattcgatttt 54000199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4115391 - 4115452
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaa 62  Q
    |||||||| || |||||| |||||||| ||||||||||||| |||||| ||||| |||||||    
T  4115391 tgttgaatgaatgagatggagaagtttcatgttcttaagataaaaatggtaattaatagtaa 4115452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 55897693 - 55897600
Alignment:
Q  93 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 186  Q
    ||||||||||| || || ||||||  |||| |||||||  |||  ||||||||||||||||||||| | |||| ||||| |||||| |||||||    
T  55897693 ttgatgaattgaggatagtttacccttaataacaagtagaatttaattttggaacgaaaagagatgaagatcatatgttgaatgaataagataa 55897600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 20512835 - 20512891
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 57  Q
    |||| ||| ||| ||||||||||||||||||||  |||||||||||||| |||||||    
T  20512835 tgttaaatgaagaagatgaagaagtttgatgtttataagatgaaaatgacaattgat 20512891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 54000233 - 54000275
Alignment:
Q  10 aaggagatgaagaagtttgatgttcttaagatgaaaatgataa 52  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||    
T  54000233 aaggagataaagaagtttgatgtttttaagataaaaatgataa 54000275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 22050995 - 22050903
Alignment:
Q  91 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 184  Q
    |||| |||||||||||||||||||||  |||||| || || ||||||||| | ||| | || |||||| | |||||||||| ||||||| ||||    
T  22050995 cctttatgaattgggggtaatttacccttaatgataaatatgattcgattct-gaaaggaatgagatgaagatcacatgttgaatgaaggagat 22050903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22050919 - 22050851
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac 69  Q
    |||||||| ||||||||||||||  ||  |||| ||||||| |||||||||| | || |||||||||||    
T  22050919 tgttgaatgaaggagatgaagaaacttattgtttttaagataaaaatgataactaattgtaagaaaaac 22050851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 13712758 - 13712945
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac--tatcgatgagcatacatttttcc-ttgat 97  Q
    |||||||||||| |||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||||  ||||    ||| |||| |||||| |||||    
T  13712758 tgttgaataaagaagataaagaagtttgatgttcttaagatggaaatggtaactgatagtaagaaaaaccttatcagcaagcctacaattttcctttgat 13712857  T
Q  98 gaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 186  Q
    | |||| |||||||||| | |||||||||| ||| ||| | |||||||||  ||||||||||| |||||||||||||||||| ||||||    
T  13712858 gtattgagggtaatttatccctaatgacaaatacaattaggttttggaac-caaagagatgtagatcacatgttaaatgaaggagataa 13712945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 9050133 - 9050313
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaact---atcgatgag-catacatttttccttga 96  Q
    |||||||| | ||||||||||||||||| ||||||| | ||||||||| ||| |||| |||||||||| |   || || ||| |  ||||| |  |||||    
T  9050133 tgttgaatgatggagatgaagaagtttgttgttcttcatatgaaaatggtaactgatcgtaagaaaaaattatattgacgagaccaacattatctcttga 9050232  T
Q  97 tgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 178  Q
    ||||||| ||||||||||||||||||||| |||| ||||||||| || ||| |||  |||||||||||| ||||||||||||    
T  9050233 tgaattgagggtaatttacctctaatgactagtaggattcgattatgaaac-aaagaagatgtaaatcaaatgttaaatgaa 9050313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 16576315 - 16576248
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 68  Q
    |||||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||    
T  16576315 tgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaa 16576248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 38576791 - 38576955
Alignment:
Q  16 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac---tatcgatgag-catacatttttccttgatgaattgggggtaat 111  Q
    |||||||||||||||  | || ||||||||||| ||| |||| ||||||||||    |||||||||| | ||||||   |||| ||||||||||| ||||    
T  38576791 atgaagaagtttgattatattgagatgaaaatggtaactgattgtaagaaaaaaccttatcgatgaggcctacattacccctttatgaattgggg-taat 38576889  T
Q  112 ttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 178  Q
    ||||  |||||||||| || |||| |||| ||| |||||| |||||| |||||||||||| ||||||    
T  38576890 ttactcctaatgacaaatatgatttgattatggtacgaaa-gagatggaaatcacatgttgaatgaa 38576955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 16863521 - 16863459
Alignment:
Q  3 ttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 65  Q
    |||||||||| |||||||||| |||||||||||| ||||||||||| ||| |||| |||||||    
T  16863521 ttgaataaagaagatgaagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaa 16863459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 38576707 - 38576764
Alignment:
Q  89 ttccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaa 146  Q
    ||||||||||||| |  ||||||||||||| ||||||||||| |||||||||||||||    
T  38576707 ttccttgatgaatcgaaggtaatttacctcaaatgacaagtatgattcgattttggaa 38576764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 9931406 - 9931337
Alignment:
Q  108 taatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 178  Q
    ||||||||| |  ||||||| ||||||||||||||||||| |||||||||| | ||||||||| |||||||    
T  9931406 taatttaccccacatgacaaatacgattcgattttggaac-aaaagagatgaatatcacatgtaaaatgaa 9931337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2909889 - 2909844
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaa 46  Q
    |||||||| |||||||||||||||||||||||| |||| |||||||    
T  2909889 tgttgaatgaaggagatgaagaagtttgatgtttttaaaatgaaaa 2909844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 25606506 - 25606423
Alignment:
Q  94 tgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 178  Q
    |||||||||| ||||||||||||  |||| ||||||| |||||| || ||||||| || |||||||| |||| ||||| ||||||    
T  25606506 tgatgaattgagggtaatttacccttaataacaagtaggattcgtttatggaacg-aaggagatgtatatcatatgttgaatgaa 25606423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 34176697 - 34176654
Alignment:
Q  14 agatgaagaagtttgatgttcttaagatgaaaatgataattgat 57  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||    
T  34176697 agatgaagaagtttgatattcttaagatgaaaatggtaactgat 34176654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 28282791 - 28282699
Alignment:
Q  93 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 186  Q
    |||||||||||  ||||||||||| ||||| |||||||  ||| |||| ||||||| || |||||| | ||||||| || ||||||| ||||||    
T  28282791 ttgatgaattgacggtaatttacccctaataacaagtaaaatttgattatggaacg-aatgagatggagatcacatattgaatgaagcagataa 28282699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 28282876 - 28282824
Alignment:
Q  16 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 68  Q
    ||||| ||||||||| || |  |||||||||||||||||||| ||||||||||    
T  28282876 atgaaaaagtttgatattatggagatgaaaatgataattgattgtaagaaaaa 28282824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38576945 - 38577001
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 57  Q
    |||||||| || ||||||||||| ||| |||||||| ||||||||||| ||| ||||    
T  38576945 tgttgaatgaaagagatgaagaactttaatgttctttagatgaaaatggtaactgat 38577001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 39341266 - 39341110
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcatacatttttccttgat 97  Q
    |||||||| ||||||||||| ||||||||| ||||||||||||||||| ||| | |||||||||||||    ||||| |||||||| |||||||||||||    
T  39341266 tgttgaatgaaggagatgaaaaagtttgatattcttaagatgaaaatggtaactcatagtaagaaaaaattatatcggtgagcatatatttttccttgat 39341167  T
Q  98 gaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaaga 154  Q
     ||||| || ||||||||| || | || || || ||||||| ||| ||||| |||||    
T  39341166 taattgaggataatttacccctcacgataaatatgattcgactttagaacgtaaaga 39341110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 42091811 - 42091951
Alignment:
Q  13 gagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaag-aaaaactatcgatgag-catacatttttccttgatgaattgggggtaa 110  Q
    |||||||| |||||||||||| || ||||||||||||||||| || ||||| |||||  || | |||| |||||| |   |||||| |||||||||||||    
T  42091811 gagatgaaaaagtttgatgtttttgagatgaaaatgataattaattgtaaggaaaaagcattggtgagacatacaataccccttgacgaattgggggtaa 42091910  T
Q  111 tttacctctaatgacaagtacgattcgattttggaacgaaa 151  Q
    |||||| ||||| ||||||| || | |||| ||||||||||    
T  42091911 tttacccctaatcacaagtaagacttgattatggaacgaaa 42091951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 46303437 - 46303371
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaa 67  Q
    |||||||||||| |||||||||||||||||| |||  |||| ||||||||| ||||| |||||||||    
T  46303437 tgttgaataaagaagatgaagaagtttgatgctctatagataaaaatgatatttgattgtaagaaaa 46303371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 192
Target Start/End: Complemental strand, 54437949 - 54437848
Alignment:
Q  91 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat-aagaa 189  Q
    ||||| |||||| ||||||||||||||||||||| || || |||| ||||||  || ||||| ||||| ||| ||| |||||||||| |||||| |||||    
T  54437949 ccttgttgaattaggggtaatttacctctaatgataaatatgatttgattttaaaatgaaaa-agatggaaaccacgtgttaaatgaggaagatgaagaa 54437851  T
Q  190 gtt 192  Q
    |||    
T  54437850 gtt 54437848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 31758298 - 31758242
Alignment:
Q  12 ggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac 69  Q
    |||||| |||||||||||| || |||||||||||||| |||||||| |||||||||||    
T  31758298 ggagattaagaagtttgatatt-ttaagatgaaaatggtaattgattgtaagaaaaac 31758242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 39341340 - 39341283
Alignment:
Q  93 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaa 150  Q
    |||||||||| ||||||||||||||||||||| || || ||||| ||||| |||||||    
T  39341340 ttgatgaattaggggtaatttacctctaatgataaataagattcaattttagaacgaa 39341283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 54437860 - 54437806
Alignment:
Q  14 agatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 68  Q
    |||||||||||||||||||| || |||| |||||| ||| |||| ||||||||||    
T  54437860 agatgaagaagtttgatgtttttgagattaaaatggtaactgattgtaagaaaaa 54437806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 48646478 - 48646423
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 57  Q
    |||||||| ||| | ||||| ||||||||||||||||||||||||||| | ||||||    
T  48646478 tgttgaatgaagaatatgaa-aagtttgatgttcttaagatgaaaatggtcattgat 48646423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 20068152 - 20068000
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgag-catacatttttccttga 96  Q
    |||||||| || ||||||| |||||||||||||||  | ||||||||| || | ||| ||||||||||   |||| |||||| | |||||||| | ||||    
T  20068152 tgttgaatgaaagagatgaggaagtttgatgttctctacatgaaaatggtact-gattgtaagaaaaagcactatggatgaggcttacattttcctttga 20068054  T
Q  97 tgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaa 150  Q
    |||||||  |||||||||||  ||| |||||||| ||||||||| |||||||||    
T  20068053 tgaattgaaggtaatttacccttaaagacaagtaggattcgattatggaacgaa 20068000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 32342667 - 32342600
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 68  Q
    |||||||| || |||||||| |||||||||||| || |||||||||||||||||||| ||||||||||    
T  32342667 tgttgaatgaatgagatgaaaaagtttgatgtttttgagatgaaaatgataattgattgtaagaaaaa 32342600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 23577218 - 23577118
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac--tatcgatgagcatacatttttccttgatg 98  Q
    |||||||| ||||||||| |||||| ||||||| || ||||||||||| ||| || || ||||||||||  ||||  ||||| ||||||||||||| |||    
T  23577218 tgttgaatgaaggagatggagaagtatgatgtttttgagatgaaaatggtaactgttactaagaaaaaccatatcattgagcctacatttttccttcatg 23577119  T
Q  99 a 99  Q
    |    
T  23577118 a 23577118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32047241 - 32047194
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 48  Q
    |||||||| || |||||||||||||||||||||||| |||||||||||    
T  32047241 tgttgaatgaatgagatgaagaagtttgatgttcttgagatgaaaatg 32047194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 20206481 - 20206527
Alignment:
Q  19 aagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 65  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||    
T  20206481 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 20206527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 22100504 - 22100550
Alignment:
Q  19 aagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 65  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||    
T  22100504 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 22100550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 32047317 - 32047262
Alignment:
Q  91 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaa 146  Q
    ||||||||||||| || ||||||||||||||||| ||||| ||||| ||| |||||    
T  32047317 ccttgatgaattgaggataatttacctctaatgataagtaggattcaattatggaa 32047262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 23577121 - 23577068
Alignment:
Q  121 atgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaat 175  Q
    ||||||| ||||||||||||||||||  ||||||||||||||| |||| ||||||    
T  23577121 atgacaaatacgattcgattttggaa-taaaagagatgtaaataacatcttaaat 23577068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 26236751 - 26236797
Alignment:
Q  94 tgatgaattgggggtaatttacctctaatgacaagtacgattcgatt 140  Q
    |||| |||||||||||||||||||||||| | ||||| |||||||||    
T  26236751 tgataaattgggggtaatttacctctaataataagtatgattcgatt 26236797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 23577070 - 23577009
Alignment:
Q  6 aataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaa 67  Q
    |||||| ||||| ||||| ||| ||||| |||| |||||||||||||||||| |||| ||||    
T  23577070 aataaaagagataaagaaattttatgtttttaaaatgaaaatgataattgattgtaaaaaaa 23577009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 10775218 - 10775163
Alignment:
Q  13 gagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  10775218 gagatgaagaagtttgatgttcttaagatgaaaatggtaattgattctaagaaaaa 10775163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 46081038 - 46080971
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 68  Q
    |||||| | |||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  46081038 tgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaaaaa 46080971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 7997197 - 7997314
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcatacatttttccttgat 97  Q
    |||||||| || || ||||||||||| ||| || |  ||||||||||| ||||||||| |||||||||    |||||||||   ||||||||| ||||||    
T  7997197 tgttgaatgaaagaaatgaagaagttagatattatagagatgaaaatggtaattgatactaagaaaaaatcatatcgatgaatctacattttttcttgat 7997296  T
Q  98 gaattgggggtaatttac 115  Q
    ||||| ||||||||||||    
T  7997297 gaatttggggtaatttac 7997314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34601449 - 34601516
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 68  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||| |  |||||||| ||| ||||||    
T  34601449 tgttgaataaaggagatgaggaagtttgatgttcttaagataaaagttgtaattgattgtaggaaaaa 34601516  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 44342055 - 44342145
Alignment:
Q  16 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac---tatcgatgagcatacatttttccttgatgaattggg 105  Q
    |||||||||||||||||| || | ||||||||| |||| ||||||||||||||    ||||| ||||| ||||||||||||||||||||||||    
T  44342055 atgaagaagtttgatgtt-ttgatatgaaaatggtaat-gatagtaagaaaaaactatatcggtgagcctacatttttccttgatgaattggg 44342145  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 3232271 - 3232179
Alignment:
Q  91 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 184  Q
    |||||||||||| |||| |||||||||||||||| ||||| ||||||||  | ||| | ||||||||| | || ||||||| ||||||||||||    
T  3232271 ccttgatgaattaggggcaatttacctctaatgataagtatgattcgatactagaa-gtaaagagatggagattacatgttgaatgaagaagat 3232179  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 7104400 - 7104316
Alignment:
Q  99 aattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 184  Q
    |||||||||||| |||| |||||||||||||| ||||||||| || |||| ||||||||| | || ||||||| ||||||| ||||    
T  7104400 aattgggggtaaattacttctaatgacaagtatgattcgattctgaaacg-aaagagatgaatattacatgttgaatgaaggagat 7104316  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 42819674 - 42819621
Alignment:
Q  15 gatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 68  Q
    |||||| |||||| |||||||| |||||||||||||||||||| ||||||||||    
T  42819674 gatgaataagttttatgttcttgagatgaaaatgataattgattgtaagaaaaa 42819621  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 52432728 - 52432672
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 57  Q
    |||| ||| |||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  52432728 tgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgat 52432672  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 49897998 - 49897909
Alignment:
Q  106 ggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaag-ataagaagttcga 195  Q
    |||||||||||||||||||||| || ||||||||| | |||| ||| |||||| | |||||||||| ||||||| || | |||||||||||    
T  49897998 ggtaatttacctctaatgacaattatgattcgattctagaac-aaaggagatggagatcacatgttgaatgaaggagaagaagaagttcga 49897909  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 68054 - 67982
Alignment:
Q  106 ggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaag 179  Q
    |||||||||||||||||||||| || ||| ||||||||||| | ||||||||| | |||||||||  |||||||    
T  68054 ggtaatttacctctaatgacaattatgatccgattttggaatg-aaagagatgaagatcacatgtagaatgaag 67982  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 68198 - 68139
Alignment:
Q  133 attcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat-aagaagtt 192  Q
    |||||||||||||||||||| ||||| | |||||||||||||||||| |||| ||||||||    
T  68198 attcgattttggaacgaaaa-agatggagatcacatgttaaatgaaggagatgaagaagtt 68139  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12145034 - 12144970
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 68  Q
    |||||||| || |||||||||||||||||| ||    |||| ||||||||||||||| ||||||||||    
T  12145034 tgttgaatgaatgagatgaagaagtttgatattg---agataaaaatgataattgattgtaagaaaaa 12144970  T

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Target: scaffold0136 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 36981 - 37033
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgt-tcttaagatgaaaatgataa 52  Q
    ||||||||||| ||||||||||| |||||||| | ||||||||||||||||||    
T  36981 tgttgaataaacgagatgaagaaatttgatgtgttttaagatgaaaatgataa 37033  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 62744 - 62791
Alignment:
Q  10 aaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 57  Q
    |||||||| ||||||||||||||| ||||||||||| |||||| ||||    
T  62744 aaggagataaagaagtttgatgtttttaagatgaaattgataactgat 62791  T

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Target: scaffold1743 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 850 - 794
Alignment:
Q  1 tgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 57  Q
    |||||||| ||||||||||||||||||||| | ||| | | ||||||||||| ||||    
T  850 tgttgaatcaaggagatgaagaagtttgatatacttgaaaggaaaatgataaatgat 794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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