View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10835_low_17 (Length: 250)
Name: NF10835_low_17
Description: NF10835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10835_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 9168099 - 9167865
Alignment:
| Q |
3 |
tttttcatatgtggaaattcatcgatttctaagctatggatttgaactttcgtggataagacaaccttgtgaagattcttgtgacatgaaccaacaaaac |
102 |
Q |
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| T |
9168099 |
tttttcatatgtggaaattcatcgatttctaagctatggatttgaactttcgtggataagacaaccttgtgaagattcttgtgacatgaaccaacaaaac |
9168000 |
T |
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| Q |
103 |
tgctacatgaattacgacagcggaggtcttgtatgtacagttgaatattgcacaactccattgggaattgatatcagttgtggtaagtagagttcatctt |
202 |
Q |
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| T |
9167999 |
tgctacatgaattacgacagcggaggtcttgtatgtacagttgactattgcacaactccattgggaattgatatcagttgtggtaagtagacttcatctt |
9167900 |
T |
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| Q |
203 |
ttcatattgaagaatattacttactattactatct |
237 |
Q |
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| T |
9167899 |
ttcattttgaagaatattacttactattattatct |
9167865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 9307310 - 9307502
Alignment:
| Q |
15 |
ggaaattcatcgatttctaagctatggatttgaactttcgtggataagacaaccttgtgaagattcttgtgacatgaaccaacaaaactgctacatgaat |
114 |
Q |
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| T |
9307310 |
ggaaattcatagacttctaagctatggatttgaactttcgtggatgagacgtggttgtgaagatcattgtgacaataacaatcaaaactgcttcatggat |
9307409 |
T |
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| Q |
115 |
tacgacagcggaggtcttgtatgtacagttgaatattgcacaactccattgggaattgatatcagttgtggtaagtagagttcatcttttcat |
207 |
Q |
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| T |
9307410 |
tacaacgccggatatcttgtatgtcaaaatgatgattgcataactccattgggacttcaaataaattgtggtaagtagatttcatcttttcat |
9307502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 9475756 - 9475842
Alignment:
| Q |
1 |
catttttcatatgtggaaattcatcgatttctaagctatggatttgaactttcgtggataagacaaccttgtgaagattcttgtgac |
87 |
Q |
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| T |
9475756 |
catttttcttacgcggaaattcacggaatgctaagctatggatttgaaatttcgtggattacacgtgcttgtgaagatttttgtgac |
9475842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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