View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10835_low_2 (Length: 412)
Name: NF10835_low_2
Description: NF10835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10835_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 43109034 - 43109438
Alignment:
| Q |
1 |
catatagaaaacgcacagagaatgagctttgataatttgggattcaaagaaaagataagtaaattttgatatatacttaatttttggatcaaactaaa-- |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
43109034 |
catatagaaaacgcacagagaatgagctttgttaatttgggattcaaagaaaagataagtaaattttgacatatacttaatttttggatcaaacaaaaga |
43109133 |
T |
|
| Q |
99 |
-------atatgtttaaggataactctcacttcatacttttattgtattttaccttcgctctattattttagtttttgtgtcgatgcatatattatctta |
191 |
Q |
| |
|
| | |||||||| || |||||||||||||||||||| ||||||||| | |||||||| |||| ||||||||||||||||||| ||||||||| |
|
|
| T |
43109134 |
caagtaaacaaatttaaggacaattctcacttcatacttttattatattttacccttgctctattgttttggtttttgtgtcgatgcatacattatctta |
43109233 |
T |
|
| Q |
192 |
tacatatttttagatgtttaatttaataaattgttctaacatagttgttcgaataacatacctaattattacacctaaacatcaaaatcttataannnnn |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43109234 |
tacatatttttagatgtttaatttaataaattgttctaacatagttgttcaaatgacatacctaattattacacctaaacatcaaaatcttataattttt |
43109333 |
T |
|
| Q |
292 |
nnggtggaaatacatg-tttgttatatcgtgaaaaatattaattgtatatgcttgtttagtattttcctttagatcttaaaataatgggaggggaacctt |
390 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43109334 |
ttggtggaaatacatgttttgttatatcgtgaaaaatattaattgtatatgcttgtttagtattttcctttagatcttaaaataatgggaggggaacctt |
43109433 |
T |
|
| Q |
391 |
aatat |
395 |
Q |
| |
|
||||| |
|
|
| T |
43109434 |
aatat |
43109438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University