View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10835_low_28 (Length: 217)
Name: NF10835_low_28
Description: NF10835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10835_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 32596970 - 32597170
Alignment:
| Q |
1 |
aatttgtacaagtgctcaatgtatacataagatgtatcactctaaacttcctttgttggcattaagggtaaagattgtaggaaagaaataaagatattag |
100 |
Q |
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| T |
32596970 |
aatttgtacaagtgctcaatgtatacataagatgtatcactctaaatttcctttgttggcattaagggtaaagattgtaggaaagaaataaagatattag |
32597069 |
T |
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| Q |
101 |
ctaatgtgtctttatagctataattgattgttggtttagttgacttcttgacttttataacgtaagcttctatgtagtggtgacaatattctatccattc |
200 |
Q |
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| T |
32597070 |
ttaatgtgtctttatagctataattgattgttggtttagttgacttcttgacttttataacgtaagcttctatgtagtggtgacaatattctatccattc |
32597169 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
32597170 |
t |
32597170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 32578502 - 32578544
Alignment:
| Q |
109 |
tctttatagctataattgattgttggtttagttgacttcttga |
151 |
Q |
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| T |
32578502 |
tcttcatagctataattgattgttggtttagttgacttcttga |
32578544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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