View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10835_low_5 (Length: 337)
Name: NF10835_low_5
Description: NF10835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10835_low_5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 167 - 337
Target Start/End: Original strand, 8861082 - 8861252
Alignment:
| Q |
167 |
cagaacaatgtttaagcgcactactcgcatacaaacaacttctagatttttacaaattattaagatactcaattatttcctatgatgagggattcaataa |
266 |
Q |
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| T |
8861082 |
cagaacaatgtttatgcgcactactcgcatacaaacaacttctatatttttacaaattattaagatattcaattctttcctatgatgagggattcaataa |
8861181 |
T |
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| Q |
267 |
ataagtatcttcttttattcctgaatcacttccatttgaaaagttcttcttgccaaagtgcgttgatcatt |
337 |
Q |
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| T |
8861182 |
ataagtatcttcttttatttcttaatcacttccatttgaaaagttcttcttgccaaagtgcgttgatcatt |
8861252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 8860916 - 8861046
Alignment:
| Q |
1 |
ctgctccaaactccactttgagcaatgggatgagggatagtagaactctagaagttgggtgcttcggttcaaaaatatgatgttgagtgtcgagcaagaa |
100 |
Q |
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| T |
8860916 |
ctgctccaaactccactttgagcaatgggatgagggatagtagaactctagaagttgggtgcttcagttcaaaaatatgatgttgagtttcgaggaagaa |
8861015 |
T |
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| Q |
101 |
aaatgagacaatttagcttgaaataaaacta |
131 |
Q |
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| T |
8861016 |
aaatgagacaatttagcttgaaataaaacta |
8861046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 9124766 - 9124817
Alignment:
| Q |
273 |
atcttcttttattcctgaatcacttccatttgaaaagttcttcttgccaaag |
324 |
Q |
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| T |
9124766 |
atctttttttattcttgaatcacttccatttgaaaagtttgtcttgccaaag |
9124817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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