View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10835_low_7 (Length: 317)
Name: NF10835_low_7
Description: NF10835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10835_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 47757243 - 47756959
Alignment:
| Q |
19 |
caagcatcattgttactttttaatatattatatgttatatttacatatatctgcaagcactcgacacttaagttaggatgtgaacaagagtgggtggtag |
118 |
Q |
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| T |
47757243 |
caagcatcattcttactttttaatatattatatgttatatttacatatatctgcaagcactcgacacttaagttaggatgtgaacaagagtgggtggtag |
47757144 |
T |
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| Q |
119 |
gatataatgaatcacactatgtatcagatttataactccattgtagctaccttgccctttgcccctcttatgtgtgtatatatgacttgtaatactctaa |
218 |
Q |
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| T |
47757143 |
gatataatgaatcacactatgtatcagatttataactccattgtagctaccttgccctttgcccctcttatgtgtgtatatatgacttataatactctaa |
47757044 |
T |
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| Q |
219 |
accctaactcgcttaagtaatataaggaaatataattgtagaggtacgcacaattgactgaattgcacacaaacaaatgtctgtg |
303 |
Q |
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| T |
47757043 |
accctaattcgcttaagtaatataaggaaatataattgtagagatacgcacaattgactgaattgcacacaaacaaatgtctgtg |
47756959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 21399809 - 21399753
Alignment:
| Q |
196 |
atatatgacttgtaatactctaaaccctaactcgcttaagtaatataaggaaatata |
252 |
Q |
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| T |
21399809 |
atatatgacttgtaacactataaaccttaattcgctcaagtaatatacggaattata |
21399753 |
T |
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