View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10836_high_4 (Length: 327)
Name: NF10836_high_4
Description: NF10836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10836_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 15453908 - 15454215
Alignment:
| Q |
1 |
tggttggttttgttaaccaattttaatgaagctctatgactaatcttgtaaaattagttgtattgttttattttttgtaaagggagactataattacaca |
100 |
Q |
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| T |
15453908 |
tggttggttttgttaaccaattttaatgaagctctatgactaatcttgtaaaattagttgtattgttttattttttgtaaagggagactataattacaca |
15454007 |
T |
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| Q |
101 |
tgaaagagggtctaaattgaaaattttcacttttaaaggcttaagaataaaattcattatttaattactctttttcttaaccatttgattcttaatgnnn |
200 |
Q |
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| T |
15454008 |
tgaaagagggtctaaattgaaaattttcacttttaaaggcttaagaataaaattcattatttaattactctttttcttaaccatttgattcttaatgaaa |
15454107 |
T |
|
| Q |
201 |
nnnncgctttaaaagtttagagtttgcccaaaaggtagctaaagtcgagttaaaaactgtttctatcaaaattgaattcattgcttcttatgaaacatgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15454108 |
aaaacgctttaaaagtttagagtttgcccaaaaggtagctaaagtcgagttaaaaactgtttctatcaaaattgaattcattgcttcttatgaaacatgg |
15454207 |
T |
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| Q |
301 |
acacatat |
308 |
Q |
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|||||||| |
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| T |
15454208 |
acacatat |
15454215 |
T |
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