View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10836_low_1 (Length: 456)
Name: NF10836_low_1
Description: NF10836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10836_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 6 - 447
Target Start/End: Original strand, 36902126 - 36902568
Alignment:
| Q |
6 |
acacatgttgcttgcttctatggaaggtataatgctctagactcattaatcaaagttaaactatttaatcagcgattaatcaatgatgtttaattgttta |
105 |
Q |
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| T |
36902126 |
acacatgttgcttgcttctatggaaggtataatgctctagactcattaatcaaagttaaactatttaatcagcgattaatcaatgatgtttaattgttta |
36902225 |
T |
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| Q |
106 |
tgatatcatgttgccagggagattatggagcggtatcgtgcttcgaaaaacggaaaagaagatattcacacaaaa-ctgatgaaaaattacaaagacatt |
204 |
Q |
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| T |
36902226 |
tgatatcatgttgccagggagattatggagcggtatcgtgcttcgaaaaacggaaaagaagatattcacacaaaaactgatgaaaaattacaaagacatt |
36902325 |
T |
|
| Q |
205 |
ccttcttggtggttttatttgttgctaggagtgacatttgttgtttctttaatgatctgcatctttctaaatgatcagattcagatgccatggtggggac |
304 |
Q |
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| T |
36902326 |
ccttcttggtggttttatttgttgctaggagtgacatttgttgtttctttaatgatctgcatctttctaaatgatcagattcagatgccatggtggggac |
36902425 |
T |
|
| Q |
305 |
ttctcattgcttcagcattggcctttatattcaccctcccaattagtatcataactgcaaccacaaaccaggttaatatctttaaacttttgcttaaaaa |
404 |
Q |
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| T |
36902426 |
ttctcattgcttcagcattggcctttatattcaccctcccaattagtatcataactgcaaccacaaaccaggttaatatctttaaacttttgcttaaaaa |
36902525 |
T |
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| Q |
405 |
gaaacaaatttgatttaaactaaataataatctatttctctgc |
447 |
Q |
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| T |
36902526 |
gaaacaaatttgatttaaactaaataataatctatttctctgc |
36902568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 396
Target Start/End: Complemental strand, 2171826 - 2171550
Alignment:
| Q |
120 |
cagggagattatggagcggtatcgtgcttcgaaaaacggaaaagaagatattcacacaaaactgatgaaaaattacaaagacattccttcttggtggttt |
219 |
Q |
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||||||||| |||||||||||||||||||| || || ||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||| |
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| T |
2171826 |
cagggagataatggagcggtatcgtgcttcttctaagggtaaagaagatatccacacaaaattgatgaaaagatacaaagacataccttcttggtggttt |
2171727 |
T |
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| Q |
220 |
tatttgttgctaggagtgacatttgttgtttctttaatgatctgcatctttctaaatgatcagattcagatgccatggtggggacttctcattgcttcag |
319 |
Q |
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| T |
2171726 |
tacgcattgctggttgtgactctcgctgtttctctcgtgctatgcatctttcttaatgaccaaattcagatgccttggtggggacttctctttgctggag |
2171627 |
T |
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| Q |
320 |
cattggcctttatattcaccctcccaattagtatcataactgcaaccacaaaccaggttaatatctttaaacttttg |
396 |
Q |
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| || || ||| |||||| || || ||||| ||||||||||| |||||||| |||||||| ||||| ||||||||| |
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| T |
2171626 |
ctttagcttttgcattcactctacctattagcatcataactgccaccacaaatcaggttaagatcttgaaacttttg |
2171550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 2172300 - 2172272
Alignment:
| Q |
6 |
acacatgttgcttgcttctatggaaggta |
34 |
Q |
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| T |
2172300 |
acacatgttgcttgcttctatggaaggta |
2172272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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