View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10836_low_2 (Length: 434)
Name: NF10836_low_2
Description: NF10836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10836_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 46 - 243
Target Start/End: Complemental strand, 32220300 - 32220102
Alignment:
| Q |
46 |
taggaatagaaaatatgctttcttaaaccaagaattagtctttctaatggtgatttcattaccctttatccacattgttcaaaatctaatgttggaataa |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
32220300 |
taggaatagaaaatatgctttcttaaaccaagaattagtctttctaatggtgatttcattatcctttacccacattgttcaaaatctaatgtttgaataa |
32220201 |
T |
|
| Q |
146 |
catatt-ttttggaaagaaagaattggtccatgtattttaatttactcatagatggcgaccatccattttcatggtagtgcatcttatgttcaacagaa |
243 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32220200 |
catatttttttggaaagaaagaattggtccatgtattttaatttactcatagatggcgaccatccattttcatggtagtgcatcttatgttcaacagaa |
32220102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 343 - 428
Target Start/End: Complemental strand, 32219966 - 32219881
Alignment:
| Q |
343 |
caccaccaccaccattacactctctctccccctctgcaaatctccggccaccggagaccgtcgtctaccaccatcgttcttctctc |
428 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32219966 |
caccaccaccaccattacactctttctccccctctttaaatctccagccactggagaccgtcgtctaccaccatcgttcttctctc |
32219881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 32220077 - 32220045
Alignment:
| Q |
236 |
caacagaatatagacatcgtatgcctatacgta |
268 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
32220077 |
caacacaatatagacatcgtatgcctatacgta |
32220045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 12408807 - 12408770
Alignment:
| Q |
359 |
acactctctctccccctctgcaaatctccggccaccgg |
396 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
12408807 |
acacactctctccccctctccaaatctccggccaccgg |
12408770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University