View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10836_low_4 (Length: 327)

Name: NF10836_low_4
Description: NF10836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10836_low_4
NF10836_low_4
[»] chr1 (1 HSPs)
chr1 (1-308)||(15453908-15454215)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 15453908 - 15454215
Alignment:
Q  1 tggttggttttgttaaccaattttaatgaagctctatgactaatcttgtaaaattagttgtattgttttattttttgtaaagggagactataattacaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15453908 tggttggttttgttaaccaattttaatgaagctctatgactaatcttgtaaaattagttgtattgttttattttttgtaaagggagactataattacaca 15454007  T
Q  101 tgaaagagggtctaaattgaaaattttcacttttaaaggcttaagaataaaattcattatttaattactctttttcttaaccatttgattcttaatgnnn 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  15454008 tgaaagagggtctaaattgaaaattttcacttttaaaggcttaagaataaaattcattatttaattactctttttcttaaccatttgattcttaatgaaa 15454107  T
Q  201 nnnncgctttaaaagtttagagtttgcccaaaaggtagctaaagtcgagttaaaaactgtttctatcaaaattgaattcattgcttcttatgaaacatgg 300  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15454108 aaaacgctttaaaagtttagagtttgcccaaaaggtagctaaagtcgagttaaaaactgtttctatcaaaattgaattcattgcttcttatgaaacatgg 15454207  T
Q  301 acacatat 308  Q
    ||||||||    
T  15454208 acacatat 15454215  T

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