View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10836_low_5 (Length: 325)

Name: NF10836_low_5
Description: NF10836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10836_low_5
NF10836_low_5
[»] chr7 (9 HSPs)
chr7 (163-309)||(5285249-5285395)
chr7 (3-113)||(5285089-5285199)
chr7 (3-112)||(5315892-5316001)
chr7 (6-113)||(5303280-5303387)
chr7 (3-113)||(5288928-5289038)
chr7 (3-113)||(5311178-5311288)
chr7 (7-113)||(46706219-46706325)
chr7 (165-263)||(5303433-5303530)
chr7 (163-280)||(5311331-5311448)
[»] chr5 (8 HSPs)
chr5 (3-113)||(1505758-1505868)
chr5 (6-113)||(1492952-1493059)
chr5 (9-113)||(1482980-1483084)
chr5 (9-87)||(1500027-1500105)
chr5 (10-83)||(1487458-1487531)
chr5 (210-297)||(1506368-1506454)
chr5 (15-83)||(1478792-1478860)
chr5 (51-107)||(1509931-1509987)
[»] chr1 (3 HSPs)
chr1 (7-113)||(44129359-44129465)
chr1 (3-112)||(44133560-44133669)
chr1 (3-113)||(44141982-44142092)
[»] chr2 (1 HSPs)
chr2 (9-111)||(24163023-24163125)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 163 - 309
Target Start/End: Original strand, 5285249 - 5285395
Alignment:
Q  163 atgtaaggatgaaatttcatctagtgttcaatatgtaccatcatattaaaataatacaattgtgattagctttatatattaacaatagttatttatttga 262  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5285249 atgtaaggatgaaatttcatctagtgttcaatatataccatcatattaaaataatacaattgtgattagctttatatattaacaatagttatttatttga 5285348  T
Q  263 ccaaatatcatttataataaagaagcaaatcgtgtcagcatattaac 309  Q
    | |||||||||||||||||||||||||||||||||||||||||||||    
T  5285349 ctaaatatcatttataataaagaagcaaatcgtgtcagcatattaac 5285395  T

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Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 5285089 - 5285199
Alignment:
Q  3 ggattgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 102  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5285089 ggattgaagacaacgggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 5285188  T
Q  103 gagatgcttaa 113  Q
    |||||||||||    
T  5285189 gagatgcttaa 5285199  T

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Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 5315892 - 5316001
Alignment:
Q  3 ggattgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 102  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||    
T  5315892 ggattgaagacaacgggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaacggttgttttgcgcagcgtggctatat 5315991  T
Q  103 gagatgctta 112  Q
    ||||||||||    
T  5315992 gagatgctta 5316001  T

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Target: chr7; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 5303280 - 5303387
Alignment:
Q  6 ttgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgag 105  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||    
T  5303280 ttgaagacaactggagaaggacttgaatggggtgtgttatttggttttggaccaggacttacaattgaaacggttgttttgcgcagtgtcgctatatgag 5303379  T
Q  106 atgcttaa 113  Q
    ||||||||    
T  5303380 atgcttaa 5303387  T

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Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 5289038 - 5288928
Alignment:
Q  3 ggattgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 102  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||    
T  5289038 ggattgaagacaactggagaaggacttgaatggggtgtcttatttggttttggaccaggacttaccattgaaactgttgttttacgtagtgtggccatat 5288939  T
Q  103 gagatgcttaa 113  Q
    |||||| ||||    
T  5288938 gagatgtttaa 5288928  T

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Target: chr7; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 5311178 - 5311288
Alignment:
Q  3 ggattgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 102  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  ||||||    
T  5311178 ggattgaagacaacgggagaaggacttgagtggggtgtattatttggttttggaccaggacttaccattgaaacagttgttttgcgtagtgtgaccatat 5311277  T
Q  103 gagatgcttaa 113  Q
    |||||| ||||    
T  5311278 gagatgtttaa 5311288  T

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Target: chr7; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 46706325 - 46706219
Alignment:
Q  7 tgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgaga 106  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||| |||||| || |||||| |    
T  46706325 tgaagacaacaggagaaggacttgaatggggtgtgttatttggctttggaccaggacttaccatagaaactgttgttttgcacagtgtcgctatatgaaa 46706226  T
Q  107 tgcttaa 113  Q
    |||||||    
T  46706225 tgcttaa 46706219  T

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Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 5303433 - 5303530
Alignment:
Q  165 gtaaggatgaaatttcatctagtgttcaatatgtaccatcatattaaaataatacaattgtgattagctttatatattaacaatagttatttatttgac 263  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||  |||||||| || ||||||||||||||||||||    
T  5303433 gtaaggatgaaatttcatctagtgttcaacatgtaccctcatatt-aaataatacacttgtgattcactttatatttttacaatagttatttatttgac 5303530  T

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Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 280
Target Start/End: Original strand, 5311331 - 5311448
Alignment:
Q  163 atgtaaggatgaaatttcatctagtgttcaatatgtaccatcatattaaaataatacaattgtgattagctttatatattaacaatagttatttatttga 262  Q
    ||||| ||||| |||||||||||||||| || |||||| ||||||||||||||| | ||||||||||| ||||||||  ||||||| ||||| ||||| |    
T  5311331 atgtatggatgtaatttcatctagtgtttaacatgtactatcatattaaaataagagaattgtgattacctttatattctaacaatggttatatatttta 5311430  T
Q  263 ccaaatatcatttataat 280  Q
    | ||| ||||||||||||    
T  5311431 caaaacatcatttataat 5311448  T

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Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 1505758 - 1505868
Alignment:
Q  3 ggattgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 102  Q
    ||||||||||| || |||||||||| |||||||||||| |||||||| |||||||| |||||||| |||||||| ||||||||||| |||||||| ||||    
T  1505758 ggattgaagactaccggagaaggacatgaatggggtgtgttatttggctttggaccgggacttactattgaaactgttgttttgcgtagtgttgctatat 1505857  T
Q  103 gagatgcttaa 113  Q
    |||||||||||    
T  1505858 gagatgcttaa 1505868  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 1492952 - 1493059
Alignment:
Q  6 ttgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgag 105  Q
    ||||||||||| |||||||| | ||||||||||||  |||| || ||||||||||||||||||||||| || ||||| ||||||||||| || |||| ||    
T  1492952 ttgaagacaaccggagaagggcatgaatggggtgtgctattcggctttggaccaggacttaccattgagactgttgtcttgcgcagtgtagctatataag 1493051  T
Q  106 atgcttaa 113  Q
    ||||||||    
T  1493052 atgcttaa 1493059  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 1482980 - 1483084
Alignment:
Q  9 aagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgagatg 108  Q
    ||||| ||||||||||| ||||| |||||||| || || || |||||||| |||||||||||||||||||||||||||| |||||| || |||||| | |    
T  1482980 aagaccacaggagaagggcttgattggggtgtgttgttcggctttggacctggacttaccattgaaaccgttgttttgcacagtgtggctatatgataag 1483079  T
Q  109 cttaa 113  Q
    |||||    
T  1483080 cttaa 1483084  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 1500027 - 1500105
Alignment:
Q  9 aagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgc 87  Q
    ||||| ||||| |||||||  |||||||||||||| ||  | |||||||| ||||||||||||||||| ||||||||||    
T  1500027 aagaccacaggtgaaggacaagaatggggtgtattgttaagctttggacctggacttaccattgaaactgttgttttgc 1500105  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 1487458 - 1487531
Alignment:
Q  10 agacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgtt 83  Q
    |||| ||||||||||||||| ||||||| || || || || |||||||| ||||||||||||||||| ||||||    
T  1487458 agaccacaggagaaggacttaaatggggagtgttgttcggctttggacctggacttaccattgaaactgttgtt 1487531  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 1506368 - 1506454
Alignment:
Q  210 aaaataatacaattgtgattagctttatatattaacaatagttatttatttgaccaa-atatcatttataataaagaagcaaatcgtgt 297  Q
    ||||||||| |||||| |||||||||||||  ||   ||||||||||||||||  || |||||||||||||| |||||| |||||||||    
T  1506368 aaaataatataattgtcattagctttatattctac--atagttatttatttgaaaaatatatcatttataattaagaagtaaatcgtgt 1506454  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 1478792 - 1478860
Alignment:
Q  15 acaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgtt 83  Q
    ||||| ||||| ||||| |||||||| || ||||| |||||||| ||||| ||||||||||| ||||||    
T  1478792 acaggtgaaggccttgactggggtgtgttgtttggctttggacctggactcaccattgaaacagttgtt 1478860  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 1509931 - 1509987
Alignment:
Q  51 tttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgagat 107  Q
    ||||||||  |||||||||||||||| |||||| | |||||||| ||||||| ||||    
T  1509931 tttggacctagacttaccattgaaacagttgttcttcgcagtgtagccatataagat 1509987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 44129359 - 44129465
Alignment:
Q  7 tgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgaga 106  Q
    ||||||| || |||||||||||||| |||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||||||| || |||||||     
T  44129359 tgaagaccacgggagaaggacttgagtggggtgttttatttggctttggaccaggtcttactattgaaactgttgttttgcgcagtgtcgctatatgagg 44129458  T
Q  107 tgcttaa 113  Q
    |||||||    
T  44129459 tgcttaa 44129465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 44133560 - 44133669
Alignment:
Q  3 ggattgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 102  Q
    ||||||||||| |||||||||||||||||||  ||||| |||||||| |||||||| || |||||||||||||| ||||||||||| ||| | || ||||    
T  44133560 ggattgaagaccacaggagaaggacttgaatttggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttgcgaagtatcgctatat 44133659  T
Q  103 gagatgctta 112  Q
    ||| ||||||    
T  44133660 gaggtgctta 44133669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 44141982 - 44142092
Alignment:
Q  3 ggattgaagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatat 102  Q
    ||||||||||| || |||||||||||||| |  ||||| |||||||| |||||||| || |||||||||||||| |||||||| |||||||| || ||||    
T  44141982 ggattgaagaccacgggagaaggacttgagtttggtgttttatttggctttggaccgggtcttaccattgaaactgttgttttacgcagtgtcgctatat 44142081  T
Q  103 gagatgcttaa 113  Q
    ||| |||||||    
T  44142082 gaggtgcttaa 44142092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 24163125 - 24163023
Alignment:
Q  9 aagacaacaggagaaggacttgaatggggtgtattatttggttttggaccaggacttaccattgaaaccgttgttttgcgcagtgttgccatatgagatg 108  Q
    ||||| ||||||||||| |||||||||||||| || ||  | ||||| ||||||||||||||||||||  ||||| | | |||||| || |||||| |||    
T  24163125 aagaccacaggagaagggcttgaatggggtgtgttgttaagctttgggccaggacttaccattgaaacgattgttctccacagtgtggctatatgatatg 24163026  T
Q  109 ctt 111  Q
    |||    
T  24163025 ctt 24163023  T

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