View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10836_low_7 (Length: 240)
Name: NF10836_low_7
Description: NF10836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10836_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 35809008 - 35808786
Alignment:
| Q |
18 |
agaaccatacatttatcatcactaaaactaaagatagagagcactctagagaaatcatgaagggttatgaaccaaggtcaagttcctcttgtgcagcctg |
117 |
Q |
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| T |
35809008 |
agaaccatacatttatcatcactaaaactaaagatagagagcactctagagaaatcatgaagggttatgaaccaaggtcaagttcctcttgtgcagcctg |
35808909 |
T |
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| Q |
118 |
caaatttctgaaaagaagatgcataccaaattgtatatttgcgccatactttcgctccgatgagtgcaagaaattcgcgaaagttcacaaagtatttgga |
217 |
Q |
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| T |
35808908 |
caaatttctgaaaagaagatgcataccaaattgtatatttgcgccatactttcgctccgatgagtgcaagaaattcgcgaaagttcacaaagtatttgga |
35808809 |
T |
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| Q |
218 |
gcaagcaatgtgagcaagattct |
240 |
Q |
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| T |
35808808 |
gcaagcaatgtgagcaagattct |
35808786 |
T |
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Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 77 - 237
Target Start/End: Complemental strand, 32036582 - 32036422
Alignment:
| Q |
77 |
aagggttatgaaccaaggtcaagttcctcttgtgcagcctgcaaatttctgaaaagaagatgcataccaaattgtatatttgcgccatactttcgctccg |
176 |
Q |
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||||||||||| ||| | ||||| || ||||||||||| |||||||| ||||||||||||||| |||| |||| ||||||| || ||||| | || |
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| T |
32036582 |
aagggttatgagccacgttcaagctcatcttgtgcagcttgcaaattattgaaaagaagatgcacaccagattgcttatttgcaccttacttccattcta |
32036483 |
T |
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| Q |
177 |
atgagtgcaagaaattcgcgaaagttcacaaagtatttggagcaagcaatgtgagcaagat |
237 |
Q |
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| T |
32036482 |
atgagtgcaagaaattcgccaaagttcacaaagtatttggagcaagcaatgttagcaagat |
32036422 |
T |
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