View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10837_low_5 (Length: 237)

Name: NF10837_low_5
Description: NF10837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10837_low_5
NF10837_low_5
[»] chr2 (6 HSPs)
chr2 (10-117)||(17496342-17496449)
chr2 (116-219)||(17496148-17496251)
chr2 (15-73)||(19692848-19692906)
chr2 (10-61)||(9124478-9124529)
chr2 (10-73)||(25563810-25563873)
chr2 (10-63)||(24227584-24227637)
[»] chr8 (4 HSPs)
chr8 (10-142)||(13644377-13644509)
chr8 (10-142)||(13744802-13744934)
chr8 (29-91)||(27138390-27138452)
chr8 (10-89)||(5345937-5346016)
[»] chr1 (1 HSPs)
chr1 (10-215)||(25517476-25517684)
[»] chr6 (1 HSPs)
chr6 (52-133)||(35036526-35036607)
[»] chr3 (2 HSPs)
chr3 (32-128)||(47597647-47597743)
chr3 (10-58)||(27686028-27686076)
[»] scaffold0194 (2 HSPs)
scaffold0194 (32-117)||(6536-6621)
scaffold0194 (151-215)||(6657-6721)


Alignment Details
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 17496449 - 17496342
Alignment:
Q  10 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggtcaaccaggaagtcaaagttctgatcataagaggaatttcgtttagaagcat 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||||    
T  17496449 gaagcaaaggataagcttatatgactttgaacaagatctgaataaaggtcaactagaaaggcaaaattctgatcataagaggaatttcgtttagaagcat 17496350  T
Q  110 ctgaagga 117  Q
    ||||||||    
T  17496349 ctgaagga 17496342  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 17496251 - 17496148
Alignment:
Q  116 gattgtagactctaaagaacggagcctatgaggtgacgtcagaagttgaaaactatgaacagttttgtcgtcttctgaaagattgtcactatcagactca 215  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| |||||    
T  17496251 gattgtagactctaaagaatggagcctctgaggtgacgtcagaagttgaagactatgaacaattttgtcgtcttctgaaggattgtcactatcaaactca 17496152  T
Q  216 aagt 219  Q
    ||||    
T  17496151 aagt 17496148  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 19692848 - 19692906
Alignment:
Q  15 aaaggagaagcttatatgactttgaacaagatctgaataaaggtcaaccaggaagtcaa 73  Q
    |||||||||||||||||||||| ||||||||||| || ||||||||||||  |||||||    
T  19692848 aaaggagaagcttatatgacttggaacaagatctaaagaaaggtcaaccataaagtcaa 19692906  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 9124529 - 9124478
Alignment:
Q  10 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggtcaa 61  Q
    |||||||| ||||| ||||||||||||||| ||| |||||||||||||||||    
T  9124529 gaagcaaaagagaaacttatatgactttgatcaaaatctgaataaaggtcaa 9124478  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 25563810 - 25563873
Alignment:
Q  10 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggtcaaccaggaagtcaa 73  Q
    ||||||||||||||||||||||||||||| | ||||| || |  |||||||||||| |||||||    
T  25563810 gaagcaaaggagaagcttatatgactttgcaaaagatttggaggaaggtcaaccagaaagtcaa 25563873  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 24227584 - 24227637
Alignment:
Q  10 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggtcaacc 63  Q
    |||||||| |||||||||||| ||||| || ||||||||||| |||||||||||    
T  24227584 gaagcaaaagagaagcttataagacttggaccaagatctgaagaaaggtcaacc 24227637  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 13644377 - 13644509
Alignment:
Q  10 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggtcaaccaggaagtcaaagttctgatcataagaggaatttcgtttagaagcat 109  Q
    |||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||| |||||||  ||||||||| || | |||||||||||||||||||    
T  13644377 gaagcaaaggagtagcttatatgactatgaacaagatatgaagaaaggtcaaccagaaagtcaatattctgatcagaataagaatttcgtttagaagcat 13644476  T
Q  110 ctgaaggattgtagactctaaagaacggagcct 142  Q
     ||||| | || ||||||| ||| | |||||||    
T  13644477 atgaagaaatgaagactctgaaggatggagcct 13644509  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 13744802 - 13744934
Alignment:
Q  10 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggtcaaccaggaagtcaaagttctgatcataagaggaatttcgtttagaagcat 109  Q
    |||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||| |||||||  ||||||||| || | |||||||||||||||||||    
T  13744802 gaagcaaaggagtagcttatatgactatgaacaagatatgaagaaaggtcaaccagaaagtcaatattctgatcagaataagaatttcgtttagaagcat 13744901  T
Q  110 ctgaaggattgtagactctaaagaacggagcct 142  Q
     ||||| | || ||||||| ||| | |||||||    
T  13744902 atgaagaaatgaagactctgaaggatggagcct 13744934  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 27138452 - 27138390
Alignment:
Q  29 tatgactttgaacaagatctgaataaaggtcaaccaggaagtcaaagttctgatcataagagg 91  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||| | |||||| | ||||||    
T  27138452 tatgacttggaacaagatctgaagaaaggtcaaccagaaagtcaatgctctgataagaagagg 27138390  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 5346016 - 5345937
Alignment:
Q  10 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggtcaaccaggaagtcaaagttctgatcataaga 89  Q
    |||||||| ||||||||||||  |||| ||||||||| |||| |||| ||||| || ||||||| ||| |||||| ||||    
T  5346016 gaagcaaaagagaagcttataaaacttggaacaagatttgaagaaagatcaactagaaagtcaacgttatgatcagaaga 5345937  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 25517684 - 25517476
Alignment:
Q  10 gaagcaaaggagaagcttatatgactttgaacaagatct--gaataaaggtcaaccaggaagtcaaagttctgatcataagaggaatttcgtttagaagc 107  Q
    |||||||| |||||||||||| |||||  |||||||| |  ||| |||||| |||||| |||||||  ||||||||| ||||| | ||| ||| |||||     
T  25517684 gaagcaaaagagaagcttatacgacttgaaacaagatttttgaagaaaggtaaaccagaaagtcaacattctgatcaaaagagaatttttgttcagaagt 25517585  T
Q  108 atctgaaggattgtagactctaaagaacggagcctatg-aggtgacgtcagaagttgaaaactatgaacagttttgtcgtcttctgaaagattgtcacta 206  Q
    |||||||||| || ||||||||||| | | ||| |||| ||||||| |||||  ||||| ||| |||||   ||||||||||| |||| || | || | |    
T  25517584 atctgaaggaatgaagactctaaaggatgaagcatatgaaggtgacatcagacattgaagactctgaaccaatttgtcgtcttttgaaggaatatcgcga 25517485  T
Q  207 tcagactca 215  Q
    |||||||||    
T  25517484 tcagactca 25517476  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 35036607 - 35036526
Alignment:
Q  52 taaaggtcaaccaggaagtcaaagttctgatcataagaggaatttcgtttagaagcatctgaaggattgtagactctaaaga 133  Q
    ||||||||||||||  ||||||  |  |||||| ||||| | |||||||||||||||||||||||| || ||||||||||||    
T  35036607 taaaggtcaaccagatagtcaacatcttgatcagaagagaattttcgtttagaagcatctgaaggaatgaagactctaaaga 35036526  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 47597743 - 47597647
Alignment:
Q  32 gactttgaacaagatctgaataaaggtcaaccaggaagtcaaagttctgatcataagaggaatttcgtttagaagcatctgaaggattgtagactct 128  Q
    |||||||||||| ||||||| |||| ||||| || |||||||   |||||||| ||||||||||||||| | || ||| ||||| |||| |||||||    
T  47597743 gactttgaacaaaatctgaagaaagatcaactagaaagtcaacactctgatcagaagaggaatttcgttcaaaaacatatgaagaattgaagactct 47597647  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 27686076 - 27686028
Alignment:
Q  10 gaagcaaaggagaagcttatatgactttgaacaagatctgaataaaggt 58  Q
    |||||||| ||||| |||||| ||||| |||||||||||||| ||||||    
T  27686076 gaagcaaaagagaatcttataagacttggaacaagatctgaagaaaggt 27686028  T

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Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 6536 - 6621
Alignment:
Q  32 gactttgaacaagatctgaataaaggtcaaccaggaagtcaaagttctgatcataagaggaatttcgtttagaagcatctgaagga 117  Q
    ||||| ||||||||| |||| ||||||||||||  ||||||| ||||| |||| ||||||| |||   | ||||||||||||||||    
T  6536 gacttggaacaagatatgaagaaaggtcaaccaaaaagtcaacgttctaatcagaagaggattttatctcagaagcatctgaagga 6621  T

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Target: scaffold0194; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 6657 - 6721
Alignment:
Q  151 acgtcagaagttgaaaactatgaacagttttgtcgtcttctgaaagattgtcactatcagactca 215  Q
    ||||||| || |||| ||| ||| ||| ||||||||||| |||| || |||||||||||||||||    
T  6657 acgtcagcagctgaagactctgaccagctttgtcgtcttttgaaggaatgtcactatcagactca 6721  T

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