View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_high_1 (Length: 508)
Name: NF10838_high_1
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 243 - 496
Target Start/End: Complemental strand, 38936131 - 38935878
Alignment:
| Q |
243 |
tgaatcattgtcattgaacactaatatcaaggactttggaataagtagtagccttaggaatggttatgtaaagaacaccatccttaacctcagccttaat |
342 |
Q |
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| T |
38936131 |
tgaaccattgtcattgaacactaatatcaaggactttggaataagtagtagccttaggaatggttatgtaaagaacaccatccttaacctcagccttaat |
38936032 |
T |
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| Q |
343 |
attctcaaactgcacattctctggcaaagcaattctgctactatacctaccatagctcttagaccattcttcatcttcatcattcttcttcttaggtgct |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38936031 |
attctcaaactgcacattctctggcaaagcaattctgctactatacctaccatagctcttagaccattcttcatcttcatcattcttcttcttaggtgct |
38935932 |
T |
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| Q |
443 |
ttctcagctttcacaaccagcatcttttcttccacccaaaccttaacatcctct |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38935931 |
ttctcagctttcacaaccagcatcttttcttccacccaaaccttaacatcctct |
38935878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 38936373 - 38936230
Alignment:
| Q |
1 |
aaacaccaagaagcgtgaaatctttattcaagagaactcaattccattcaaacttttcttatattcacatgtgtagtagtagcacagacagctgcgccat |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38936373 |
aaacaccaagaagcatgaaatctttattcaagagaactcaattccattcaaacttttcttatattcacatgtgtagtagtagcacagacagctgcgccat |
38936274 |
T |
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| Q |
101 |
aacacaagtgacttccctccataatagagaggcttcctcacaac |
144 |
Q |
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| T |
38936273 |
aacacaagtgacttccctccataatagagaggcttcctcacaac |
38936230 |
T |
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