View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_high_17 (Length: 218)
Name: NF10838_high_17
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 4284256 - 4284146
Alignment:
| Q |
92 |
caactctcaaatccaaaatcaatttccatctcaaaaccctaaacccccaacttcaccaaatcccgacggaaatcactgccgatctccctgttaaccaccg |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
4284256 |
caactctcaaatccaaaatcaatttccatctcaaaaccctaaacccccaacttcaccaaatcccgacagaaatcactgccgatctccccgttaaccaccg |
4284157 |
T |
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| Q |
192 |
tcactctctct |
202 |
Q |
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||||||||||| |
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| T |
4284156 |
tcactctctct |
4284146 |
T |
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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 8682327 - 8682280
Alignment:
| Q |
94 |
actctcaaatccaaaatcaatttccatctcaaaaccctaaacccccaa |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8682327 |
actctcaaatccaaaatcaatttccatctcaaaaccctaaaccaccaa |
8682280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 6348731 - 6348776
Alignment:
| Q |
94 |
actctcaaatccaaaatcaatttccatctcaaaaccctaaaccccc |
139 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
6348731 |
actctcaaatacaaaatcaatttgcatctcaaaaccctaaaccccc |
6348776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 34351022 - 34350977
Alignment:
| Q |
94 |
actctcaaatccaaaatcaatttccatctcaaaaccctaaaccccc |
139 |
Q |
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|||||||||| |||||||||||| ||||||||||||| |||||||| |
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| T |
34351022 |
actctcaaatacaaaatcaatttgcatctcaaaacccaaaaccccc |
34350977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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