View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_high_18 (Length: 206)
Name: NF10838_high_18
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 13761745 - 13761918
Alignment:
| Q |
17 |
agaagtgggcagcaagaaaatactcctaacatacgatgggattgcatgcattacagatttaatcataacctcccatcccgcttttgaaagacatttgcta |
116 |
Q |
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| T |
13761745 |
agaagtgggcagcaagaaa-tactcataacatacgatgggattgcatgcagtacagatttaatcataacctcccgtcccgcttttgaaagacatttgcta |
13761843 |
T |
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| Q |
117 |
ctccatgtgtttattttatgccacacgcgatccttaacataagcgaagacagatgtacgattcctgccaatcatc |
191 |
Q |
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| T |
13761844 |
ctccatgtgtttattttatgccacacgcgatccttaacataagcgaaaacagatgtacgattcctaccaatcatc |
13761918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 12528316 - 12528399
Alignment:
| Q |
38 |
actcctaacatacgatgggattgcatgcattacagatttaatcataacctcccatcccgcttttgaaagacatttgctactcca |
121 |
Q |
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| T |
12528316 |
actcataacataagatggtatagcttgaagtacggacttaatcataacctcccgtcccgcctttgaaaggcacttgctactcca |
12528399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 51108957 - 51108839
Alignment:
| Q |
33 |
aaaatactcctaacatacgatgggattgcatgcattacagatttaatcataacctcccatcccgcttttgaaagacatttgctactccatgtgtttattt |
132 |
Q |
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| T |
51108957 |
aaaatactcatgacatacgaagggatagcttgaaggaccgatttaatcatgacttcacaccctgctttggaaagacatttactactccaagaattgattt |
51108858 |
T |
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| Q |
133 |
tatgccacacgcgatcctt |
151 |
Q |
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| T |
51108857 |
tatgccacactctatcctt |
51108839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 31662657 - 31662741
Alignment:
| Q |
69 |
acagatttaatcataacctcccatcccgcttttgaaagacatttgctactccatgtgtttattttatgccacacgcgatccttaa |
153 |
Q |
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| T |
31662657 |
acagatttaatcattacctcacgacccgctttcgaaagacactttccactccaggaattaattttctgccaaacgcgatccttaa |
31662741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 31933739 - 31933655
Alignment:
| Q |
69 |
acagatttaatcataacctcccatcccgcttttgaaagacatttgctactccatgtgtttattttatgccacacgcgatccttaa |
153 |
Q |
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| T |
31933739 |
acagatttaatcattacctcacgacccgctttcgaaagacactttccactccaggaattaattttctgccaaacgcgatccttaa |
31933655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 72 - 191
Target Start/End: Complemental strand, 41342515 - 41342396
Alignment:
| Q |
72 |
gatttaatcataacctcccatcccgcttttgaaagacatttgctactccatgtgtttattttatgccacacgcgatccttaacataagcgaagacagatg |
171 |
Q |
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||||| ||||||||||| | |||||||| || || |||||||| ||||| || || ||||| |||||||||||||| |||||||||| ||| |||| || |
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| T |
41342515 |
gattttatcataacctcacgacccgctttagagaggcatttgctgctccaagtattgattttctgccacacgcgatctttaacataagagaaaacagctg |
41342416 |
T |
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| Q |
172 |
tacgattcctgccaatcatc |
191 |
Q |
| |
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| |||||||||||||||||| |
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| T |
41342415 |
tgcgattcctgccaatcatc |
41342396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 45636364 - 45636268
Alignment:
| Q |
72 |
gatttaatcataacctcccatcccgcttttgaaagacatttgctactccatgtgtttattttatgccacacgcgatccttaacataagcgaagacag |
168 |
Q |
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||||| ||||||||||| | |||||||| || || |||||||| ||||| || || ||||| |||||||||||||| ||||| |||| ||| |||| |
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| T |
45636364 |
gattttatcataacctcacgacccgctttagagaggcatttgctgctccaagtattgattttctgccacacgcgatctttaacgtaagagaaaacag |
45636268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 25596466 - 25596518
Alignment:
| Q |
69 |
acagatttaatcataacctcccatcccgcttttgaaagacatttgctactcca |
121 |
Q |
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|||||||| ||||||||||| | || |||||||| ||||||||||||||||| |
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| T |
25596466 |
acagatttgatcataacctcacgccctgcttttgacagacatttgctactcca |
25596518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 121
Target Start/End: Complemental strand, 1510700 - 1510609
Alignment:
| Q |
30 |
aagaaaatactcctaacatacgatgggattgcatgcattacagatttaatcataacctcccatcccgcttttgaaagacatttgctactcca |
121 |
Q |
| |
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|||||||||||| | ||||| ||||| || || |||| |||||||||||||| ||||||| || ||||| || | ||||||||||||||| |
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| T |
1510700 |
aagaaaatactcatgacataagatggaatcgcttgcagcacagatttaatcatcacctccctaccagctttcgacaaacatttgctactcca |
1510609 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 8723161 - 8723045
Alignment:
| Q |
32 |
gaaaatactcctaacatacgatgggattgcatgcattacagatttaatcataacctcccatcccgcttttgaaagacatttgctactccatgtgtttatt |
131 |
Q |
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|
||||| |||| |||||||||| ||||| || || | ||||||||||||||||| | || ||| ||||| || | ||||| |||||||| || ||||| |
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| T |
8723161 |
gaaaacactcataacatacgaagggatagcttggaggacagatttaatcataactttccttcctgctttggataagcatttactactccagctgcttatt |
8723062 |
T |
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| Q |
132 |
ttatgccacacgcgatc |
148 |
Q |
| |
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|| |||||||| ||||| |
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| T |
8723061 |
ttctgccacactcgatc |
8723045 |
T |
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