View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_10 (Length: 358)
Name: NF10838_low_10
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 5 - 347
Target Start/End: Complemental strand, 37858794 - 37858452
Alignment:
| Q |
5 |
catttataaggatttatgatgatgtttattgataccttgtgcacattataagtggtttcctggacttgaattgaaaagtctgttggaattctaggggcaa |
104 |
Q |
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| T |
37858794 |
catttataaggatttatgatgatgtttattgataccttgtgcacattataagtggtttcctggacttgaattgaaaagtctgttggaattcgaggggcaa |
37858695 |
T |
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| Q |
105 |
cgaacctgcataagccgaaatnnnnnnntaaacagagaaaataaatcactcatacaaaaagaactagtggtaattaccttagacacgcatagttaaactc |
204 |
Q |
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| T |
37858694 |
cgaacctgcataagccgaaataaaaaaataaacagagaaaataaatcactcatacaaaaagaactagtggtaattaccttagacacgcatagttaaactc |
37858595 |
T |
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| Q |
205 |
atgtatatatctactagctttttagctgcataaaatataaaggactttatttctgggagtaccttgaatgttcattttttatgctatcagctattgtgac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858594 |
atgtatatatctactagctttttagctgcataaaatataaaggactttatttctgggagtaccttgaatgttcattttttatgctatcagctattgtgac |
37858495 |
T |
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| Q |
305 |
atgtttgttgggaataactatgcttttatctgaaacttgttca |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858494 |
atgtttgttgggaataactatgcttttatctgaaacttgttca |
37858452 |
T |
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