View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_11 (Length: 353)
Name: NF10838_low_11
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 45746088 - 45746435
Alignment:
| Q |
1 |
tcactactacttcccattaatcccattggtgaactaataccaggcattgagcgaccatctccaagatcaagtcccattggcaaaggattgccgagggagc |
100 |
Q |
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| T |
45746088 |
tcactactacttcccatcaatcccattggtgaactaataccaggcattgagcgaccatctccaagatcaagtcccattggcaaaggattgccgagggagc |
45746187 |
T |
|
| Q |
101 |
ttgaaccaccaccaaaaccgttccttccaataccaagttccagaccagaatttgaggttggtagagccatgggattagccaatgatgatattggtttgcc |
200 |
Q |
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| T |
45746188 |
ttgaaccaccaccaaaaccattccttccaataccaagttccagaccagaatttgaggttggtagagccatgggattagccaatgatgatattggtttgcc |
45746287 |
T |
|
| Q |
201 |
aaggaacttgtttgttaaggcacatatacggttcaattcgtccttgagactatcgttttcaattctaatctggtgctcttcaaacaatatttggccagga |
300 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45746288 |
aaggaacttgtttgttaaggcgcatatacggttcaattcatcctttagacgagcgttttcaattctaatctggtgctcttcaaacaatatttggccagga |
45746387 |
T |
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| Q |
301 |
attgctggtccaccacagttgttacatattggattcacctttgcttct |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45746388 |
attgctggtccaccacagttgttacatattggattcaccattgcttct |
45746435 |
T |
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