View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_12 (Length: 346)
Name: NF10838_low_12
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_12 |
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| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 339
Target Start/End: Complemental strand, 665266 - 664933
Alignment:
| Q |
6 |
accttggctttgcgtaattcaaacaatatgtatcatcaccatgcacctgatgtggatttgctggcctaagctcttatgagaaagatatgagaaaacttag |
105 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
665266 |
accttggctttgtgcaattcaaacaatatgtatcatcaccatgcacctgatgtggatttgctggcctaagttcttatgagaaagatatgagaaaacttag |
665167 |
T |
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| Q |
106 |
tttgatctgaattgaaaccataaggtagcaggagcttgtggtataccatagtgcaaaagggttacctatgacatagcctttaatcaaaccatgcaaaaga |
205 |
Q |
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| T |
665166 |
tttgatctgaattgaaaccataaggtagcaggagcttgtggtataccatagtgcaaaagggttacctatgacatagcctttaatcaaaccatgcaaaaga |
665067 |
T |
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| Q |
206 |
agtctgtactgcctagaaataaaaaagtgactgacctgctgcaacttgcctcgcgagaatatgctcgctatggcgagtatgtgctcgcctagcgagtcat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
665066 |
agtctgtactgcctagaaataaaaaagtgactgacctgctgcaacttgcctcgcgagaatatgcttgctatggcgagtatgtgctcgcctagcgagtcat |
664967 |
T |
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| Q |
306 |
gacagtttcagaaaatgaattttgacctttgctt |
339 |
Q |
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| T |
664966 |
gacagtttcagaaaatgaattttgacttttgctt |
664933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 204544 - 204820
Alignment:
| Q |
6 |
accttggctttgcgtaattcaaacaatatgtatcatcaccatgcacctgatgtggatttgctggcctaagctcttatgagaaagatatgagaaaacttag |
105 |
Q |
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| T |
204544 |
accttggctttgagcaattcaaacaatatgtatcatcaccatgcacctgatgtggatttgctggcctaagatcttatgagaaagatatgagaaaacttag |
204643 |
T |
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| Q |
106 |
tttgatctgaattgaaaccataaggtagcaggagcttgtggtataccatagtgcaaaagggttacctatgacatagcctttaatcaaaccatgcaaaaga |
205 |
Q |
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| T |
204644 |
tttgatctgaattaaaaccataaggtagtaggagcttgtggtataccatagtgaaaaagggttacccatgacatagcctttaatcaaacaatgcaaaaga |
204743 |
T |
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| Q |
206 |
agtctgtactgcctagaaataaaaaagtgactgacctgctgcaacttgcctcgcgagaatatgctcgctatggcgag |
282 |
Q |
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| T |
204744 |
agtctgtactgcctagaaataaaaaagtgactgacctactgcaactcgactcgcgagaatatgctcgctatggcgag |
204820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 204866 - 204920
Alignment:
| Q |
277 |
ggcgagtatgtgctcgcctagcgagtcatgacagtttcagaaaatgaattttgac |
331 |
Q |
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| T |
204866 |
ggcgagtatgtgctcgcctagcgagtcatgacagtttcagaaaatgaattttgac |
204920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 4502056 - 4502332
Alignment:
| Q |
6 |
accttggctttgcgtaattcaaacaatatgtatcatcaccatgcacctgatgtggatttgctggcctaagctcttatgagaaagatatgagaaaacttag |
105 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4502056 |
accttggctttgtgcaattcaaacaatatgtatcatcaccatgcacctgatgtggatttgctggcctaagctcttattagaaagatatgagaaaacttag |
4502155 |
T |
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| Q |
106 |
tttgatctgaattgaaaccataaggtagcaggagcttgtggtataccatagtgcaaaagggttacctatgacatagcctttaatcaaaccatgcaaaaga |
205 |
Q |
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| T |
4502156 |
tttgatctaaattaaaaccataaggttgcaggagcttgtggtataccatagtgcaaaagggttacctatgacatagtctttaatcaaacaatgcaaaaga |
4502255 |
T |
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| Q |
206 |
agtctgtactgcctagaaataaaaaagtgactgacctgctgcaacttgcctcgcgagaatatgctcgctatggcgag |
282 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4502256 |
agtatgtactgcctagaaatcaaaaagtgactgacctgctgcaactcgcctcgcgagaatatgctcgctatggcgag |
4502332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 4502376 - 4502432
Alignment:
| Q |
275 |
atggcgagtatgtgctcgcctagcgagtcatgacagtttcagaaaatgaattttgac |
331 |
Q |
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| T |
4502376 |
atggcgagtatgtgctcgcctagcgagtcatgacagtttcagaaaatgaattttgac |
4502432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 14120018 - 14119974
Alignment:
| Q |
238 |
gacctgctgcaacttgcctcgcgagaatatgctcgctatggcgag |
282 |
Q |
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| T |
14120018 |
gacctgctgcaactcgcctcgcgagaatatgctcgctatggcgag |
14119974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 14120239 - 14120187
Alignment:
| Q |
6 |
accttggctttgcgtaattcaaacaatatgtatcatcaccatgcacctgatgt |
58 |
Q |
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| T |
14120239 |
accttggctttgcataattcaaacaatacgtatcataatcatgcaccttatgt |
14120187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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