View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_13 (Length: 344)
Name: NF10838_low_13
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 37119456 - 37119782
Alignment:
| Q |
1 |
agcaataagcattgagatcgtagcattcataggtgttcctgttctttcatcaacaagagcaaaccaaggtggcatcatgtgagtacgcgcaatgtgtgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37119456 |
agcaataagcattgagatcgtagcattcataggtgttcctgttctttcatcaacaagagcaaaccaaggtggcatcatgtgagtacgtgcaatgtgtgtt |
37119555 |
T |
|
| Q |
101 |
aaataacgagcttgaccaaccgcactaaccaacaaaaccgttgtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacag |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119556 |
aagtaacgagcttgaccaaccgcactaaccaacaaaaccgttgtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacag |
37119655 |
T |
|
| Q |
201 |
cactaaaagcaactgagaaaggagcatcagtatcaagttctttgtaattctgcataagacaaagtgttgctgctagtaagcaatatattgctgttgtaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37119656 |
cactaaaagcaactgagaaaggagcatcagtatcaagttctttgtaattctgcataagacaaagtgttgctcctagtaagcaatatattgctgttgtaat |
37119755 |
T |
|
| Q |
301 |
cgtcattgatccaactagaccgatagg |
327 |
Q |
| |
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| T |
37119756 |
cgtcattgatccaactagaccgatagg |
37119782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 321
Target Start/End: Original strand, 37111207 - 37111521
Alignment:
| Q |
7 |
aagcattgagatcgtagcattcataggtgttcctgttctttcatcaacaagagcaaaccaaggtggcatcatgtgagtacgcgcaatgtgtgttaaataa |
106 |
Q |
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| T |
37111207 |
aagcattgagattgtagcattcataggtgttcctgttctttcatcaacatgagcaaaccaaggcggcatcatgtgagtacgtgcaatgtgagttaaataa |
37111306 |
T |
|
| Q |
107 |
cgagcttgaccaaccgcactaaccaacaaaaccgttgtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacagcactaa |
206 |
Q |
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| T |
37111307 |
cgagcttgaccaacagcaccaaccaacaaaaccgttgtcattccttttaaagcgcctaatgaaacaatgtacttagcccaatccattccaacagcactaa |
37111406 |
T |
|
| Q |
207 |
aagcaactgagaaaggagcatcagtatcaagttctttgtaattctgcataagacaaagtgttgctgctagtaagcaatatattgctgttgtaatcgtcat |
306 |
Q |
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||||||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
37111407 |
aagcaacagagaaaggagcatcaacatttagttctttgtaattctgcataagacacagtgttgctgccagtaagcaataaattattgttgtaatcgtcat |
37111506 |
T |
|
| Q |
307 |
tgatccaactagacc |
321 |
Q |
| |
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||| ||||||||||| |
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| T |
37111507 |
tgaaccaactagacc |
37111521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 37136778 - 37136510
Alignment:
| Q |
20 |
gtagcattcataggtgttcctgttctttcatcaacaagagcaaaccaaggtggcatcatgtgagtacgcgcaatgtgtgttaaataacgagcttgaccaa |
119 |
Q |
| |
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|||||||||| |||||| || ||| | |||| |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| | ||| | |
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| T |
37136778 |
gtagcattcaaaggtgtcccggttttctcatgaacaagagcaaaccaaggaggcatcatgtgagtacgagcaatgtgagttaaataacgtgaggcaccga |
37136679 |
T |
|
| Q |
120 |
ccgcactaaccaacaaaaccgttgtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaactgagaa |
219 |
Q |
| |
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| || ||||||||||||| || |||||||| ||||| || || |||| ||||||||| |||||||| || |||||||| |||||| ||||| || || |
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| T |
37136678 |
caacattaaccaacaaaacagtcgtcattcccttcaatgctcccaatgcaacaatgtatttagcccatccccatccaacagaactaaatgcaaccgaaaa |
37136579 |
T |
|
| Q |
220 |
aggagcatcagtatcaagttctttgtaattctgcataagacaaagtgttgctgctagtaagcaatatat |
288 |
Q |
| |
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|| |||| ||||| | |||||| ||||||||||| || ||||||| ||||||| |||||||||| |
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| T |
37136578 |
tggtgcattgacatcaattgttttgtagttctgcataaggcatagtgttgttgctagtgagcaatatat |
37136510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 10681195 - 10681104
Alignment:
| Q |
110 |
gcttgaccaaccgcactaaccaacaaaaccgttgtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacagc |
201 |
Q |
| |
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||||||||||| |||| ||| | ||||| | |||||||||||||| ||||| |||| |||||| ||||||||||| | |||||||||||| |
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| T |
10681195 |
gcttgaccaacagcaccaacaagtaaaacactagtcattcctttcaatgcaccaaatgcaacaatatacttagcccatttcattccaacagc |
10681104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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