View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10838_low_15 (Length: 332)

Name: NF10838_low_15
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10838_low_15
NF10838_low_15
[»] chr1 (3 HSPs)
chr1 (77-322)||(48472166-48472411)
chr1 (76-248)||(35687416-35687588)
chr1 (15-85)||(48471792-48471862)
[»] chr8 (1 HSPs)
chr8 (76-248)||(44972017-44972192)
[»] chr6 (1 HSPs)
chr6 (76-248)||(7724120-7724292)
[»] chr5 (1 HSPs)
chr5 (15-46)||(31111364-31111395)
[»] chr4 (1 HSPs)
chr4 (15-46)||(55010898-55010929)
[»] chr3 (1 HSPs)
chr3 (15-46)||(53145444-53145475)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 77 - 322
Target Start/End: Original strand, 48472166 - 48472411
Alignment:
Q  77 aaaataaatcctttcgatatgtcaatgacataacaaaaggttcataaaatgttgaaatctcattatttgatgaaactggaagtgaggatcttcctaaatt 176  Q
    |||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48472166 aaaataaatcctttcgatatgataacgacataacaaaaggttcataaaatgttgaaatctcattatttgatgaaactggaagtgaggatcttcctaaatt 48472265  T
Q  177 taattacattccaagtaatttgatacatcaaaatgctaatgtcaatatttcacttgctcgaattgcggatgaaggttgttgttctgtagnnnnnnnngtt 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  48472266 taattacattccaagtaatttgatacatcaaaatgctaatgtcaatatttcacttgctcgaattgcggatgaaggttgttgttctgtagttttttttgtt 48472365  T
Q  277 tcgttatgactgttagatgaagttatttttggatcaatctcctatg 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48472366 tcgttatgactgttagatgaagttatttttggatcaatctcctatg 48472411  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 76 - 248
Target Start/End: Complemental strand, 35687588 - 35687416
Alignment:
Q  76 aaaaataaatcctttcgatatgtcaatgacataacaaaaggttcataaaatgttgaaatctcattatttgatgaaactggaagtgaggatcttcctaaat 175  Q
    ||||| |||||||||||||||||| | ||||| |||||||||||  ||||  || |||| |||||||| ||||||||    ||||||||| |||| ||||    
T  35687588 aaaaagaaatcctttcgatatgtcgaagacattacaaaaggttctgaaaacattaaaatatcattattagatgaaaccaacagtgaggattttccaaaat 35687489  T
Q  176 ttaattacattccaagtaatttgatacatcaaaatgctaatgtcaatatttcacttgctcgaattgcggatga 248  Q
    |||||||||||||| ||||     |  |||||| ||| ||||| ||||||||||||||||| |||||||||||    
T  35687488 ttaattacattccatgtaacacactgtatcaaagtgcaaatgttaatatttcacttgctcggattgcggatga 35687416  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 48471792 - 48471862
Alignment:
Q  15 aagattaatgttccctttcaatctagtggtttnnnnnnncttttccatgtaaaatgccaccaaaaataaat 85  Q
    ||||||||||||||||||||||| ||||||||       |||| |||||||||||||||||||||||||||    
T  48471792 aagattaatgttccctttcaatccagtggtttaaaaaaactttcccatgtaaaatgccaccaaaaataaat 48471862  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 248
Target Start/End: Original strand, 44972017 - 44972192
Alignment:
Q  76 aaaaataaatcctttcgatatgtcaatgacataacaaaaggttc---ataaaatgttgaaatctcattatttgatgaaactggaagtgaggatcttccta 172  Q
    ||||| |||||||||||||||||| | |||||||||||||||||   | ||||  || |||| |||||||| || |||||    ||||||||| |||| |    
T  44972017 aaaaaaaaatcctttcgatatgtcgaagacataacaaaaggttctgaaaaaaacattaaaatatcattattagaggaaaccaacagtgaggattttccaa 44972116  T
Q  173 aatttaattacattccaagtaatttgatacatcaaaatgctaatgtcaatatttcacttgctcgaattgcggatga 248  Q
    |||||||||| |||||| ||||    ||  |||||| ||| ||||| ||||||||||||||||| ||| |||||||    
T  44972117 aatttaattatattccatgtaacacaatgtatcaaagtgcaaatgttaatatttcacttgctcggattacggatga 44972192  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 248
Target Start/End: Complemental strand, 7724292 - 7724120
Alignment:
Q  76 aaaaataaatcctttcgatatgtcaatgacataacaaaaggttcataaaatgttgaaatctcattatttgatgaaactggaagtgaggatcttcctaaat 175  Q
    ||||| ||||| ||| |||||||| | |||||||||||||||||  ||||  || |||| |||||||| || |||||    ||||||||| |||  ||||    
T  7724292 aaaaagaaatcattttgatatgtcgaagacataacaaaaggttcggaaaacattaaaatatcattattagacgaaaccaacagtgaggatattctaaaat 7724193  T
Q  176 ttaattacattccaagtaatttgatacatcaaaatgctaatgtcaatatttcacttgctcgaattgcggatga 248  Q
    |||||||||||||| ||||    ||  |||||| ||| ||||| ||||||||||||||||| |||| ||||||    
T  7724192 ttaattacattccatgtaaaacaatgtatcaaagtgcaaatgttaatatttcacttgctcggattgtggatga 7724120  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 31111364 - 31111395
Alignment:
Q  15 aagattaatgttccctttcaatctagtggttt 46  Q
    ||||||||||||||||||||||||||||||||    
T  31111364 aagattaatgttccctttcaatctagtggttt 31111395  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 55010929 - 55010898
Alignment:
Q  15 aagattaatgttccctttcaatctagtggttt 46  Q
    ||||||||||||||||||||||||||||||||    
T  55010929 aagattaatgttccctttcaatctagtggttt 55010898  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 53145444 - 53145475
Alignment:
Q  15 aagattaatgttccctttcaatctagtggttt 46  Q
    ||||||||||||||||||||||||||||||||    
T  53145444 aagattaatgttccctttcaatctagtggttt 53145475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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