View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_16 (Length: 311)
Name: NF10838_low_16
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 32812650 - 32812904
Alignment:
| Q |
18 |
acaaaaagaatgggtgatgagtatgcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtcttcatggtgga |
117 |
Q |
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| T |
32812650 |
acaaaaagaatgggtgatgagtatgcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtcttcatggtgga |
32812749 |
T |
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| Q |
118 |
ggttagggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtccagtagtttatcataagaaggatattatactattgttcccttcttt |
217 |
Q |
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| T |
32812750 |
ggttagggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtccagtggtttatcataagaaggatattatactattgttcccttcttt |
32812849 |
T |
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| Q |
218 |
tcacggaggtgaaggtggtgatgatggggtaaatattattgtggctcttcctcct |
272 |
Q |
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| T |
32812850 |
tcacggagttgaaggtggtgatgatggggtaaatattattgtggctcttcctcct |
32812904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 23 - 270
Target Start/End: Original strand, 32830185 - 32830432
Alignment:
| Q |
23 |
aagaatgggtgatgagtatgcaaggtctattattgattggggagaattgtataatggttttccgaatggagagcttttggtgtcttcatggtggaggtta |
122 |
Q |
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| T |
32830185 |
aagaatgagtgatgaatatgcaagatctattattgattggggagagttgtataatggttttccaaatggggatgttttggtgtcttcatggtggaggcta |
32830284 |
T |
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| Q |
123 |
gggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtccagtagtttatcataagaaggatattatactattgttcccttcttttcacg |
222 |
Q |
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| T |
32830285 |
gggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtcctgtggtttatcataggaaggatattatactattatttccttcttttaatg |
32830384 |
T |
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| Q |
223 |
gaggtgaaggtggtgatgatggggtaaatattattgtggctcttcctc |
270 |
Q |
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| T |
32830385 |
gaggtgaaggtggtggtgacggagtaaatattatagtggctcttcctc |
32830432 |
T |
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