View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10838_low_17 (Length: 310)

Name: NF10838_low_17
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10838_low_17
NF10838_low_17
[»] chr7 (1 HSPs)
chr7 (6-302)||(48083270-48083566)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 6 - 302
Target Start/End: Original strand, 48083270 - 48083566
Alignment:
Q  6 agttagatggatgttttcacttcaattctatatctaatttaagagcaatgatcattgagcaattatgtgaggcacttgaattttcttcattcggcggttt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48083270 agttagatggatgttttcacttcaattctatatctaatttaagaccaatgatcattgagcaattatgtgaggcacttgaattttcttcattcggcggttt 48083369  T
Q  106 gctttaaatcactgggaggtgtggtagaaaataacattaatgagtgttatttacagaatgtgtgaattcaaccttatatatacccttctcatttgcatgt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48083370 gctttaaatcactgggaggtgtggtagaaaataacattaatgagtgttatttacagaatgtgtgaattcaaccttatatatacccttctcatttgcatgt 48083469  T
Q  206 tccatacaaaccacgagttatcaaattgatacatcacatacaatttagtaacacttctcagtcctctcaattattttgcattgcaatggctacttct 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48083470 tccatacaaaccacgagttatcaaattgatacatcacatacaatttagtaacacttctcagtcctctcaattattttgcattgcaatggctacttct 48083566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University