View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_19 (Length: 286)
Name: NF10838_low_19
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 37721337 - 37721074
Alignment:
| Q |
17 |
tgttgaccttgaaattcttcagagaagtggttcttccaccgagagaaaacaagctggtaatactaatatataatgccgctttctttcttgagattattgn |
116 |
Q |
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| T |
37721337 |
tgttgaccttgaaattcttcagagaagtggttcttccaccgagagaaaacaagctggtaatactaatatataatgccgctttctttcttgagattattgt |
37721238 |
T |
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| Q |
117 |
nnnnnnnnnnnagttctttaatctttattcattcttctt---gttgttgcagctgctatttttcctgttcttcaaaaacaacaccagctacttgttactt |
213 |
Q |
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| T |
37721237 |
tttttgttttttgttctttaatctttattcattcttcttcttgttgttgcagctgctatttttcctgttcttcaaaaacaacaccagctacttgttactt |
37721138 |
T |
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| Q |
214 |
tgcttctttgcaatgcctgtgccatggaggtatgtactttttccaattgcattattaatcatgc |
277 |
Q |
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| T |
37721137 |
tgcttctttgcaatgcctgtgccatggaggtatgtactttttccaatttcattattaatcatgc |
37721074 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 16388380 - 16388422
Alignment:
| Q |
187 |
aaaaacaacaccagctacttgttactttgcttctttgcaatgc |
229 |
Q |
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| T |
16388380 |
aaaaacaacaccagcttcttgttactttgcttctctgtaatgc |
16388422 |
T |
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