View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10838_low_2 (Length: 474)

Name: NF10838_low_2
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10838_low_2
NF10838_low_2
[»] chr6 (13 HSPs)
chr6 (98-430)||(2438800-2439156)
chr6 (261-430)||(3676331-3676505)
chr6 (307-414)||(2537059-2537169)
chr6 (307-393)||(16316657-16316743)
chr6 (307-379)||(10927869-10927941)
chr6 (307-378)||(27901260-27901331)
chr6 (310-384)||(32249936-32250010)
chr6 (270-340)||(17590000-17590070)
chr6 (307-357)||(23915527-23915577)
chr6 (371-430)||(3676767-3676831)
chr6 (298-340)||(17589948-17589990)
chr6 (263-308)||(10927743-10927788)
chr6 (261-302)||(35219457-35219498)
[»] chr3 (21 HSPs)
chr3 (261-366)||(22176437-22176542)
chr3 (261-366)||(22101492-22101597)
chr3 (307-414)||(44822221-44822331)
chr3 (307-430)||(22101929-22102057)
chr3 (309-384)||(53359493-53359568)
chr3 (307-372)||(35863689-35863754)
chr3 (307-414)||(28096290-28096400)
chr3 (307-379)||(35369078-35369150)
chr3 (307-384)||(22176876-22176953)
chr3 (311-384)||(22833299-22833372)
chr3 (307-384)||(7115968-7116045)
chr3 (311-369)||(7116577-7116635)
chr3 (312-378)||(34492078-34492144)
chr3 (311-379)||(3422631-3422699)
chr3 (261-301)||(3422811-3422851)
chr3 (261-300)||(22101801-22101840)
chr3 (270-307)||(42897030-42897067)
chr3 (261-301)||(3424693-3424733)
chr3 (261-301)||(35368936-35368976)
chr3 (261-297)||(44822079-44822115)
chr3 (261-297)||(51139766-51139802)
[»] chr5 (12 HSPs)
chr5 (261-414)||(28221965-28222120)
chr5 (307-414)||(28263786-28263896)
chr5 (264-377)||(3160861-3160973)
chr5 (307-379)||(1190401-1190473)
chr5 (332-377)||(3160809-3160854)
chr5 (261-302)||(38938772-38938813)
chr5 (261-308)||(28766093-28766140)
chr5 (254-308)||(7464327-7464381)
chr5 (254-308)||(39850686-39850740)
chr5 (332-377)||(3160756-3160801)
chr5 (268-301)||(38939034-38939067)
chr5 (261-301)||(1190255-1190295)
[»] chr4 (20 HSPs)
chr4 (293-414)||(11974680-11974804)
chr4 (307-414)||(44814511-44814621)
chr4 (311-414)||(3729490-3729596)
chr4 (261-340)||(11974809-11974888)
chr4 (307-379)||(54198299-54198370)
chr4 (311-382)||(38001454-38001525)
chr4 (309-414)||(9162593-9162701)
chr4 (308-379)||(44673273-44673344)
chr4 (310-414)||(5525027-5525132)
chr4 (306-384)||(12216960-12217038)
chr4 (270-329)||(33728869-33728928)
chr4 (270-308)||(2291288-2291326)
chr4 (262-308)||(9162916-9162962)
chr4 (261-302)||(49358018-49358059)
chr4 (264-301)||(54198471-54198508)
chr4 (312-414)||(10726370-10726475)
chr4 (312-414)||(10940139-10940244)
chr4 (261-308)||(44814376-44814423)
chr4 (261-302)||(11064724-11064765)
chr4 (261-297)||(5524881-5524917)
[»] chr7 (15 HSPs)
chr7 (261-379)||(9329647-9329764)
chr7 (307-379)||(11321279-11321351)
chr7 (307-378)||(41755438-41755509)
chr7 (307-414)||(35492178-35492287)
chr7 (307-384)||(47221000-47221077)
chr7 (311-414)||(20621218-20621324)
chr7 (307-384)||(9307724-9307799)
chr7 (314-377)||(9302210-9302273)
chr7 (314-377)||(9306648-9306711)
chr7 (264-301)||(45022631-45022668)
chr7 (351-384)||(9303286-9303319)
chr7 (261-301)||(9302059-9302099)
chr7 (261-301)||(9306497-9306537)
chr7 (261-301)||(11321451-11321491)
chr7 (261-297)||(47220854-47220890)
[»] chr1 (16 HSPs)
chr1 (311-414)||(14494798-14494902)
chr1 (307-414)||(237176-237284)
chr1 (307-376)||(29699187-29699256)
chr1 (307-379)||(50231531-50231603)
chr1 (307-375)||(8528219-8528287)
chr1 (307-408)||(9041223-9041327)
chr1 (320-384)||(20133038-20133102)
chr1 (326-378)||(43575210-43575262)
chr1 (314-384)||(14245889-14245959)
chr1 (261-308)||(24162672-24162719)
chr1 (261-308)||(43577183-43577230)
chr1 (261-308)||(50231398-50231445)
chr1 (307-373)||(49265943-49266009)
chr1 (307-340)||(9046387-9046420)
chr1 (264-308)||(14245797-14245841)
chr1 (261-297)||(14494661-14494697)
[»] chr2 (16 HSPs)
chr2 (262-419)||(44972992-44973148)
chr2 (311-384)||(35193434-35193507)
chr2 (307-384)||(309848-309925)
chr2 (311-464)||(7061867-7062025)
chr2 (311-384)||(43528444-43528517)
chr2 (307-378)||(44539531-44539602)
chr2 (307-384)||(13594515-13594592)
chr2 (261-308)||(19901609-19901656)
chr2 (307-358)||(25047962-25048013)
chr2 (261-297)||(44539702-44539738)
chr2 (261-308)||(7061734-7061781)
chr2 (261-308)||(21956532-21956579)
chr2 (254-308)||(8063236-8063290)
chr2 (326-368)||(27339513-27339555)
chr2 (255-297)||(43528298-43528340)
chr2 (261-297)||(2221938-2221974)
[»] scaffold0066 (2 HSPs)
scaffold0066 (309-414)||(56467-56575)
scaffold0066 (261-302)||(56333-56374)
[»] chr8 (5 HSPs)
chr8 (307-376)||(24432233-24432302)
chr8 (311-384)||(5592692-5592765)
chr8 (262-308)||(32889059-32889105)
chr8 (254-297)||(26528069-26528112)
chr8 (261-301)||(32889177-32889217)
[»] scaffold0025 (1 HSPs)
scaffold0025 (307-384)||(3490-3567)
[»] scaffold0123 (1 HSPs)
scaffold0123 (310-430)||(17180-17305)
[»] scaffold0086 (1 HSPs)
scaffold0086 (254-308)||(48321-48376)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 98 - 430
Target Start/End: Complemental strand, 2439156 - 2438800
Alignment:
Q  98 cataattactcagcaatttcttaacataatttagaaaaacatttagccatttagacaaaattatttcaggacatgtagaccattcataaggcttcatgtt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  2439156 cataattactcagcaatttcttaacataatttagaaaaacatttagccatttagacaaaatt---tcaggacatgtagaccattcataaggcttcatgtt 2439060  T
Q  198 tgtttgtacatttataatgcactaaacacactattcatctatatcta-------------gaaaactaccattttc-----------gggttgaactttt 273  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||             |||||||| |||||||           |||||||||||||    
T  2439059 tgtttgaacatttataatgcactaaacacactattcatctatatctatactatatataaagaaaactatcattttcagcatacttttgggttgaactttt 2438960  T
Q  274 ctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttt 373  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2438959 ctttccaaaaatacccttaattttaaatacaaatagtcaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttt 2438860  T
Q  374 tacctctgttatccaaagat-actcacaaaaaactaacac--aacaaaatttcatgttac 430  Q
    |||||||||||||||||||| |  | ||||||||||||||  ||||||||||||||||||    
T  2438859 tacctctgttatccaaagatcaaactcaaaaaactaacacaaaacaaaatttcatgttac 2438800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 261 - 430
Target Start/End: Original strand, 3676331 - 3676505
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 360  Q
    |||||| ||||||||| | ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| ||| ||||||||||||||     
T  3676331 gggttggacttttcttcccaaaaatacccttaattttaaatacaaatagtcaattatacaataacacgtggattagtaatccatatcactaatcgtccct 3676430  T
Q  361 gttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta--acacaacaaaatttcatgttac 430  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||  ||| ||||||||||||||||||    
T  3676431 gttaaccctcttttacctctgttatccaaagatcaaactcacaaaaaactatcacaaaacaaaatttcatgttac 3676505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 2537059 - 2537169
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 403  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||| |||| ||| ||||   ||||||||||    
T  2537059 tagccaattataaaataacacgtgggttactaatccatgtcactaatcgtccccgttaaccctattttacctccgttaaccacagatcaaactcacaaaa 2537158  T
Q  404 aactaacacaa 414  Q
    ||||| |||||    
T  2537159 aactagcacaa 2537169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 307 - 393
Target Start/End: Complemental strand, 16316743 - 16316657
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat 393  Q
    |||| |||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  16316743 tagctaattataaaataacacgtggattactaatccatgtcactaatcgtctccgttaaccctcttttacctatgttaaccatagat 16316657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 10927869 - 10927941
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 379  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||||||||||||||    
T  10927869 tagccaattataaaataacacgtggattactaatccatgtcaataatcgtcctcgttaaccctcttttacctc 10927941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 27901331 - 27901260
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 378  Q
    ||||||||||||||||||||| ||||||| |||| ||||| ||| |||||||||||||||||||||||||||    
T  27901331 tagccaattataaaataacacatggattactaatccatgttactgatcgtccccgttaaccctcttttacct 27901260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 32250010 - 32249936
Alignment:
Q  310 ccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||||| | ||||||| ||||||||||||||||    
T  32250010 ccaattataaaataacacgtagattactaatccatgtcactaatcgtctctgttaaccatcttttacctctgtta 32249936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 17590070 - 17590000
Alignment:
Q  270 ttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaat 340  Q
    ||||||||| ||||||||| |||||||||| || ||||| |  |||| |||||||||||||||||||||||    
T  17590070 ttttctttccaaaaataccattaattttaattacaaataactcattacaaaataacacgtggattagtaat 17590000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 23915577 - 23915527
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtc 357  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  23915577 tagccaattataaaataacacgtggattactaatctatgtcactaatcgtc 23915527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 430
Target Start/End: Original strand, 3676767 - 3676831
Alignment:
Q  371 ttttacctctgttatccaaagat---actcacaaaaaacta--acacaacaaaatttcatgttac 430  Q
    |||||||||||||||||||||||   |||||||||||||||  ||| ||||||||||||||||||    
T  3676767 ttttacctctgttatccaaagatcaaactcacaaaaaactatcacaaaacaaaatttcatgttac 3676831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 17589990 - 17589948
Alignment:
Q  298 aaatataaatagccaattataaaataacacgtggattagtaat 340  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  17589990 aaatacaaatagccaattataaattaacacgtggattagtaat 17589948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 10927743 - 10927788
Alignment:
Q  263 gttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||    
T  10927743 gttgaaattttctttccaaaaatactcttaattttaaatataaata 10927788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 35219498 - 35219457
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaata 302  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  35219498 gggttggacttttctttccaaaaatacccttaattttaaata 35219457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 22176437 - 22176542
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 360  Q
    |||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  22176437 gggttgaacttttcttttcaaaaatacccttaattttaaatacaaatagccaattataaaataacacgtggattagtaatccatgtcactaatcgtccac 22176536  T
Q  361 gttaac 366  Q
    ||||||    
T  22176537 gttaac 22176542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 22101492 - 22101597
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 360  Q
    |||||||||||||||||  ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |    
T  22101492 gggttgaacttttcttttcaaaaatacctttaattttaaatacaaatagccaattataaaataacacgtggattagtaatccatgtcactaatcgtcaac 22101591  T
Q  361 gttaac 366  Q
    ||||||    
T  22101592 gttaac 22101597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 44822221 - 44822331
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 403  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||   ||| ||||||    
T  44822221 tagccaattataaaacaacacatggattactaattcatgtcactaatcgtccccgttaaccctcttttacatctgttaaccaaagatcaaacttacaaaa 44822320  T
Q  404 aactaacacaa 414  Q
    ||||| |||||    
T  44822321 aactagcacaa 44822331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 307 - 430
Target Start/End: Original strand, 22101929 - 22102057
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 403  Q
    ||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||||| |||| ||| | ||   ||||||||||    
T  22101929 tagcctattataaaataacacatggattactaatccatgtcactaatcgtccccattaaccctcttttacctccgttaaccacaaatcaaactcacaaaa 22102028  T
Q  404 aactaacac--aacaaaatttcatgttac 430  Q
    ||||| |||  |||||||  |||||||||    
T  22102029 aactagcactaaacaaaaagtcatgttac 22102057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 309 - 384
Target Start/End: Original strand, 53359493 - 53359568
Alignment:
Q  309 gccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    ||||||||||||||| |||||| |||| |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  53359493 gccaattataaaatagcacgtgaattattaattcatgtcactaatcatccccgttaaccctcttttacctccgtta 53359568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 35863754 - 35863689
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctctt 372  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  35863754 tagccaattataaaataacacgtggattactaatccatgtcactaatcgtccccgttaaccatctt 35863689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 28096290 - 28096400
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 403  Q
    |||||||||||||||||||| || ||||| |||| ||||||||||||||||| ||||||||||||||| |||| ||||  || ||||   ||||||||||    
T  28096290 tagccaattataaaataacatgttgattactaatccatgtcactaatcgtcctcgttaaccctcttttccctccgttaatcacagatcaaactcacaaaa 28096389  T
Q  404 aactaacacaa 414  Q
    ||||| |||||    
T  28096390 aactagcacaa 28096400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 35369078 - 35369150
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 379  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||| |||||||||||    
T  35369078 tagccaattataaaataacacatggattactaatccatgtcactaatcgtccccattaaccatcttttacctc 35369150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 307 - 384
Target Start/End: Original strand, 22176876 - 22176953
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    ||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||| ||||||||| ||||    
T  22176876 tagcctattataaaataacacatggattactaatccatgtcactaatcgtccccattaacccttttttacctccgtta 22176953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 22833299 - 22833372
Alignment:
Q  311 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| | |||| |||| |||||||||||||||    
T  22833299 caattataaaataacacgtggattactaatccatgtcactaatcgttctcgttgacccacttttacctctgtta 22833372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 384
Target Start/End: Complemental strand, 7116045 - 7115968
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    |||| ||||||||||||||||||| |||| || | ||||| |||||| ||||||||||| ||||||||||||| ||||    
T  7116045 tagcaaattataaaataacacgtgtattactagtccatgttactaattgtccccgttaatcctcttttacctccgtta 7115968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 7116635 - 7116577
Alignment:
Q  311 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccct 369  Q
    |||||||||||||||||||| |||| | ||||||||||||||| ||||| |||||||||    
T  7116635 caattataaaataacacgtgaattaatgattcatgtcactaattgtcccggttaaccct 7116577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 378
Target Start/End: Original strand, 34492078 - 34492144
Alignment:
Q  312 aattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 378  Q
    ||||||||||||||||||| |||| |||| |||||||||||| ||  |||||||| |||||||||||    
T  34492078 aattataaaataacacgtgaattactaatccatgtcactaatagtttccgttaactctcttttacct 34492144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 379
Target Start/End: Complemental strand, 3422699 - 3422631
Alignment:
Q  311 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 379  Q
    |||||||||| ||||| |||||||| |||| ||||||  ||||||| ||||||| ||||||||||||||    
T  3422699 caattataaagtaacatgtggattattaatccatgtctttaatcgtacccgttatccctcttttacctc 3422631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 3422851 - 3422811
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaat 301  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  3422851 gggttggacttttctttccaaaaatacccttaattttaaat 3422811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 22101801 - 22101840
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaa 300  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  22101801 gggttgaacttttcttttcaaaaatacccttaattttaaa 22101840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 42897067 - 42897030
Alignment:
Q  270 ttttctttcaaaaaatacccttaattttaaatataaat 307  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  42897067 ttttctttccaaaaatacccttaattttaaatacaaat 42897030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 3424733 - 3424693
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaat 301  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  3424733 gggttggacttttatttccaaaaatacccttaattttaaat 3424693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 35368936 - 35368976
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaat 301  Q
    |||||| ||||||||||| |||||||||||| |||||||||    
T  35368936 gggttggacttttctttccaaaaatacccttgattttaaat 35368976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 44822079 - 44822115
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaatttt 297  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  44822079 gggttgaacatttctttccaaaaatacccttaatttt 44822115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 51139802 - 51139766
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaatttt 297  Q
    |||||||||||||||||  ||||||||||||||||||    
T  51139802 gggttgaacttttcttttcaaaaatacccttaatttt 51139766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 261 - 414
Target Start/End: Original strand, 28221965 - 28222120
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 360  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||||||||||  ||  |     
T  28221965 gggttggacttttctttccaaaaatacccttaattttaaatacaaatagtcaattataaaataacatgtggattagtaatccatgtcactaactgt-act 28222063  T
Q  361 gttaaccctcttttacctctgttatccaaagat---actcacaaaaaactaacacaa 414  Q
    ||||||||||||||||||  |||| ||||||||   ||||||||||||||| |||||    
T  28222064 gttaaccctcttttaccttcgttaaccaaagatcaaactcacaaaaaactagcacaa 28222120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 307 - 414
Target Start/End: Complemental strand, 28263896 - 28263786
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 403  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||   ||||||||||    
T  28263896 tagccaattataaaataacacgtggattactaattcatgtcactaatcgtccccgttaactctcttttacctctgttaaccacatatcaaactcacaaaa 28263797  T
Q  404 aactaacacaa 414  Q
    ||||| |||||    
T  28263796 aactagcacaa 28263786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 3160973 - 3160861
Alignment:
Q  264 ttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgtt 363  Q
    ||||||||||||||| |||| ||||||||||||| |||| || ||  |||||||||||||||| ||| ||||||||| ||| |||||||||  | |||||    
T  3160973 ttgaacttttctttccaaaa-tacccttaattttgaatacaattaatcaattataaaataacatgtgaattagtaatccatatcactaatcagctccgtt 3160875  T
Q  364 aaccctcttttacc 377  Q
    ||||||||||||||    
T  3160874 aaccctcttttacc 3160861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 1190401 - 1190473
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 379  Q
    ||||||||||||||||||||| || |||| |||| |||||||  |||||||||||||||||||||||||||||    
T  1190401 tagccaattataaaataacacatgaattactaatccatgtcaacaatcgtccccgttaaccctcttttacctc 1190473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 3160854 - 3160809
Alignment:
Q  332 attagtaattcatgtcactaatcgtccccgttaaccctcttttacc 377  Q
    |||| |||||||||||||||||| || |||||||||||||||||||    
T  3160854 attaataattcatgtcactaatcatctccgttaaccctcttttacc 3160809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 38938813 - 38938772
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaata 302  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  38938813 gggttggacttttctttccaaaaatacccttaattttaaata 38938772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 28766093 - 28766140
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    |||||||| ||||||||| |||||||||||||||||| |||| |||||    
T  28766093 gggttgaatttttctttccaaaaatacccttaatttttaatacaaata 28766140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 7464381 - 7464327
Alignment:
Q  254 cattttcgggttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    |||||| |||||||||||||||||| ||||||||| | |||||| |||| |||||    
T  7464381 catttttgggttgaacttttctttccaaaaataccttcaattttcaatacaaata 7464327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 39850686 - 39850740
Alignment:
Q  254 cattttcgggttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    |||||| |||||| |||||||||||||||||||| || |||||| |||| |||||    
T  39850686 catttttgggttggacttttctttcaaaaaatactctcaattttcaatagaaata 39850740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 3160801 - 3160756
Alignment:
Q  332 attagtaattcatgtcactaatcgtccccgttaaccctcttttacc 377  Q
    ||||||||| ||||||||||||| || | |||||||||||||||||    
T  3160801 attagtaatccatgtcactaatcatctctgttaaccctcttttacc 3160756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 38939067 - 38939034
Alignment:
Q  268 acttttctttcaaaaaatacccttaattttaaat 301  Q
    ||||||||||| ||||||||||||||||||||||    
T  38939067 acttttctttccaaaaatacccttaattttaaat 38939034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 1190255 - 1190295
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaat 301  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  1190255 gggttggaattttctttccaaaaatacccttaattttaaat 1190295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 293 - 414
Target Start/End: Complemental strand, 11974804 - 11974680
Alignment:
Q  293 attttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaaga 392  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||| |||| |||||||    
T  11974804 attttaaatacaaatagccaattataaaataacacatggattagtaattcatgccactaatcgtctccgttaactctcttttacctccgttaaccaaaga 11974705  T
Q  393 t---actcacaaaaaactaacacaa 414  Q
    |   ||||||||||||||| |||||    
T  11974704 tcaaactcacaaaaaactagcacaa 11974680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 44814511 - 44814621
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 403  Q
    ||||||||||||||||||||||| ||||| ||||  ||||||||||| ||||||||||||||||||||||||| |||| ||| ||||   ||||||||||    
T  44814511 tagccaattataaaataacacgtagattactaatctatgtcactaattgtccccgttaaccctcttttacctccgttaaccatagatcaaactcacaaaa 44814610  T
Q  404 aactaacacaa 414  Q
    ||||| |||||    
T  44814611 aactagcacaa 44814621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 3729490 - 3729596
Alignment:
Q  311 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaact 407  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||  ||||||||||||||||||| |||| ||| ||||   ||||||||||||||    
T  3729490 caattataaaataacatgtggattactaatacatgtcactaatcgtccatgttaaccctcttttacctccgttaaccatagatcaaactcacaaaaaact 3729589  T
Q  408 aacacaa 414  Q
    | |||||    
T  3729590 agcacaa 3729596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 261 - 340
Target Start/End: Complemental strand, 11974888 - 11974809
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaat 340  Q
    |||||||||||||||||   ||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  11974888 gggttgaacttttcttttccaaaatacccttaattttaattacaaatagccaattacaaaataacacgtggattagtaat 11974809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 54198370 - 54198299
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 379  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||    
T  54198370 tagccaattataaaataacacgtggattactaatccatgtcactaatcat-cccgttaaccctcttttacctc 54198299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 382
Target Start/End: Original strand, 38001454 - 38001525
Alignment:
Q  311 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgt 382  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||||||| ||||||||||||    
T  38001454 caattataaaataacacatggattactaatccatgtcactaatcatccccgttaaccctattttacctctgt 38001525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 309 - 414
Target Start/End: Complemental strand, 9162701 - 9162593
Alignment:
Q  309 gccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaa 405  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||| ||| ||||||||||||||||| || |||| ||| | ||   ||||||||||||    
T  9162701 gccaattataaaataacacgtggattaataatccatgtcattaatcttccacgttaaccctcttttacatccgttaaccacaaatcaaactcacaaaaaa 9162602  T
Q  406 ctaacacaa 414  Q
    ||| |||||    
T  9162601 ctagcacaa 9162593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 308 - 379
Target Start/End: Complemental strand, 44673344 - 44673273
Alignment:
Q  308 agccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 379  Q
    |||||||||||| |||||||||| |||| ||||||| ||||||||| || ||||||||||||||||||||||    
T  44673344 agccaattataagataacacgtgaattactaattcacgtcactaattgttcccgttaaccctcttttacctc 44673273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 414
Target Start/End: Original strand, 5525027 - 5525132
Alignment:
Q  310 ccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaac 406  Q
    ||||||||||||||||| || ||||| |||| |||||||||  |||||||||||||| |||||||||||| |||| ||| | ||   |||||||||||||    
T  5525027 ccaattataaaataacaagtagattactaatccatgtcact--tcgtccccgttaactctcttttacctccgttaaccacaaatcaaactcacaaaaaac 5525124  T
Q  407 taacacaa 414  Q
    || |||||    
T  5525125 tagcacaa 5525132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 384
Target Start/End: Original strand, 12216960 - 12217038
Alignment:
Q  306 atagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| |||| || |  |||||||||||||||||| |||||    
T  12216960 atagccaattataaaataacatgtggattactaatccatgtcagtaattgttcttgttaaccctcttttacctatgtta 12217038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 33728869 - 33728928
Alignment:
Q  270 ttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgt 329  Q
    ||||||||  ||||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  33728869 ttttcttttcaaaaatatccttaattttaaatacaaatagtcaattataaaataacacgt 33728928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 2291326 - 2291288
Alignment:
Q  270 ttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  2291326 ttttctttcaaaaaatacccttaattttcaatataaata 2291288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 9162962 - 9162916
Alignment:
Q  262 ggttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  9162962 ggttggacttttctttccaaaaatacccttaattttaaatacaaata 9162916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 49358018 - 49358059
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaata 302  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  49358018 gggttggacttttctttccaaaaatacccttaattttaaata 49358059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 54198508 - 54198471
Alignment:
Q  264 ttgaacttttctttcaaaaaatacccttaattttaaat 301  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  54198508 ttgaacttttctttccaaaaatacccttaattttaaat 54198471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 414
Target Start/End: Original strand, 10726370 - 10726475
Alignment:
Q  312 aattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta 408  Q
    ||||||| ||||||| |||||||| ||||  ||||||  |||||||||| ||||||||||||| | | ||||| ||| | ||   |||||||||||||||    
T  10726370 aattatagaataacatgtggattactaatctatgtcataaatcgtccccattaaccctcttttgcttttgttaaccacatatcaaactcacaaaaaacta 10726469  T
Q  409 acacaa 414  Q
     |||||    
T  10726470 gcacaa 10726475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 414
Target Start/End: Original strand, 10940139 - 10940244
Alignment:
Q  312 aattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta 408  Q
    ||||||| ||||||| |||||||| ||||  ||||||  |||||||||| ||||||||||||| | | ||||| ||| | ||   |||||||||||||||    
T  10940139 aattatagaataacatgtggattactaatctatgtcataaatcgtccccattaaccctcttttgcttttgttaaccacatatcaaactcacaaaaaacta 10940238  T
Q  409 acacaa 414  Q
     |||||    
T  10940239 gcacaa 10940244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 44814376 - 44814423
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    |||| ||||||||||||| |||||||||||||||||||| | ||||||    
T  44814376 gggtagaacttttctttccaaaaatacccttaattttaattttaaata 44814423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 11064765 - 11064724
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaata 302  Q
    |||||| ||||||||||| |||||||||||||||||| ||||    
T  11064765 gggttggacttttctttccaaaaatacccttaattttcaata 11064724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 5524881 - 5524917
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaatttt 297  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  5524881 gggttgtacttttctttccaaaaatacccttaatttt 5524917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 261 - 379
Target Start/End: Original strand, 9329647 - 9329764
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcccc 360  Q
    |||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| ||||| || |     
T  9329647 gggttggatttttctttcaaaa-atacccttaattttaaatataaatagacaattataaaataacatgtggattagtaatccatgtcattaatcatctct 9329745  T
Q  361 gttaaccctcttttacctc 379  Q
    ||||  |||||||||||||    
T  9329746 gttagacctcttttacctc 9329764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 11321351 - 11321279
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 379  Q
    ||||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||    
T  11321351 tagccaattataaaataacacatgaattactaattcatgtcactaatcgtccccattaaccctcttttacctc 11321279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 41755509 - 41755438
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 378  Q
    ||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  41755509 tagccaattgtaaaataacatgtggattactaattcatgtcaccaatcgtccccgttaaccctcttttacct 41755438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 35492178 - 35492287
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 403  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||| ||||||||| |||| ||| ||||    |||||||||    
T  35492178 tagccaattataaaataacatgtggattactaattcatgtcactaatcatcctcgttaaccct-ttttacctccgttaaccatagatcaagctcacaaaa 35492276  T
Q  404 aactaacacaa 414  Q
    ||||| |||||    
T  35492277 aactagcacaa 35492287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 307 - 384
Target Start/End: Original strand, 47221000 - 47221077
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||||| ||||| | ||||||||||||||||| ||||    
T  47221000 tagccagttataaaataacacgtgaattactaattcatgtcactaattgtcccagctaaccctcttttacctccgtta 47221077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 20621324 - 20621218
Alignment:
Q  311 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaact 407  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||||||||||||  ||||||||||| |||| ||| | ||   ||||||||||||||    
T  20621324 caattataaaataacaagtagattactaatccatgtcactaatcgtccccgttaactttcttttacctccgttaaccacaaatcaaactcacaaaaaact 20621225  T
Q  408 aacacaa 414  Q
    | |||||    
T  20621224 agcacaa 20621218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 384
Target Start/End: Complemental strand, 9307799 - 9307724
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    ||||||||| ||||||| |||||| |||| |||| |||||||||| ||||||||||||||||||||||||||| ||||    
T  9307799 tagccaatt-taaaatagcacgtgcattactaatccatgtcacta-tcgtccccgttaaccctcttttacctccgtta 9307724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 9302210 - 9302273
Alignment:
Q  314 ttataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacc 377  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||   |||||||||||||||||    
T  9302210 ttataaaataactcgtggattaataatccatgtaactaatcgtcattgttaaccctcttttacc 9302273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 9306648 - 9306711
Alignment:
Q  314 ttataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacc 377  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||   |||||||||||||||||    
T  9306648 ttataaaataactcgtggattaataatccatgtaactaatcgtcattgttaaccctcttttacc 9306711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 45022668 - 45022631
Alignment:
Q  264 ttgaacttttctttcaaaaaatacccttaattttaaat 301  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  45022668 ttgaacttttctttcaaaaaatacctttaattttaaat 45022631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 9303319 - 9303286
Alignment:
Q  351 aatcgtccccgttaaccctcttttacctctgtta 384  Q
    ||||||||||||||||||||||||||||| ||||    
T  9303319 aatcgtccccgttaaccctcttttacctccgtta 9303286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 9302059 - 9302099
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaat 301  Q
    |||||| ||||||||||  ||||||||||||||||||||||    
T  9302059 gggttggacttttcttttcaaaaatacccttaattttaaat 9302099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 9306497 - 9306537
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaat 301  Q
    |||||| ||||||||||  ||||||||||||||||||||||    
T  9306497 gggttggacttttcttttcaaaaatacccttaattttaaat 9306537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 11321491 - 11321451
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaat 301  Q
    |||||| ||||||||||| |||| |||||||||||||||||    
T  11321491 gggttggacttttctttccaaaactacccttaattttaaat 11321451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 47220854 - 47220890
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaatttt 297  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  47220854 gggttaaacttttctttccaaaaatacccttaatttt 47220890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 14494798 - 14494902
Alignment:
Q  311 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatcca-aagatactcacaaaaaactaa 409  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| ||| |  | |||||||||||||||     
T  14494798 caattataaaataacacgtggattactaatccatgtcactaatcgtctccgttaaccctcttttacctctgttaaccacatcaaactcacaaaaaactag 14494897  T
Q  410 cacaa 414  Q
    |||||    
T  14494898 cacaa 14494902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 237176 - 237284
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat--actcacaaaaa 404  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||||||| || |||||||||||||||||| |||| ||| ||||  | |||||||||    
T  237176 tagccaattataaaataacacgtg-attactaatccatgtcactaatcgtctcctttaaccctcttttacctccgttaaccatagatcaaatcacaaaaa 237274  T
Q  405 actaacacaa 414  Q
    |||| |||||    
T  237275 actagcacaa 237284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 29699256 - 29699187
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttac 376  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| ||||||||    
T  29699256 tagccaattataaaataacacgtggattactaatccatgtcactgatcgtccccgttaaccatcttttac 29699187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 50231531 - 50231603
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctc 379  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||||||| ||||    
T  50231531 tagccaattataaaataacacgtggattactaatccatgtcaataatcgttcccgttaaccctctttttcctc 50231603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 307 - 375
Target Start/End: Original strand, 8528219 - 8528287
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctctttta 375  Q
    ||||||||||||||||||||||||||||| |||| ||||||| | |||||||| |||||||||||||||    
T  8528219 tagccaattataaaataacacgtggattactaatccatgtcaatgatcgtccctgttaaccctctttta 8528287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 408
Target Start/End: Original strand, 9041223 - 9041327
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaa 403  Q
    |||||||||||||||||| ||||| |||  |||| ||||||| |||||||  ||||||||||||||||||||| ||||  || ||||   ||||||||||    
T  9041223 tagccaattataaaataatacgtgaattgctaatccatgtcattaatcgtttccgttaaccctcttttacctccgttaatcatagatcaaactcacaaaa 9041322  T
Q  404 aacta 408  Q
    |||||    
T  9041323 aacta 9041327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 20133102 - 20133038
Alignment:
Q  320 aataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    |||||||||| ||||| |||| |||||||| |||||||| |||||||||||||||||||| ||||    
T  20133102 aataacacgtagattactaatccatgtcaccaatcgtcctcgttaaccctcttttacctccgtta 20133038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 43575262 - 43575210
Alignment:
Q  326 acgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 378  Q
    |||||||||| |||| ||||||| ||||||||||| |||||||||||||||||    
T  43575262 acgtggattactaatccatgtcagtaatcgtccccattaaccctcttttacct 43575210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 14245889 - 14245959
Alignment:
Q  314 ttataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    |||||||||||||| | ||||| | ||  ||||||||||||||||| ||||||| |||||||| |||||||    
T  14245889 ttataaaataacacatagattacttatcgatgtcactaatcgtcccagttaaccttcttttacatctgtta 14245959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 24162719 - 24162672
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    |||||| ||||||||||| || |||||||||||||||||||| |||||    
T  24162719 gggttggacttttctttccaagaatacccttaattttaaatacaaata 24162672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 43577230 - 43577183
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    |||||| ||||||||||||||||||||||| |||||| |||| |||||    
T  43577230 gggttggacttttctttcaaaaaataccctcaattttcaatacaaata 43577183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 50231398 - 50231445
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    |||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  50231398 gggttgaaattttcttttcaaaaatacccttaattttaaatacaaata 50231445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 373
Target Start/End: Original strand, 49265943 - 49266009
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttt 373  Q
    |||| |||||||||||||| |||| |||| ||||   |||||||||| || ||||||||||||||||    
T  49265943 tagctaattataaaataacgcgtgaattactaatcagtgtcactaattgttcccgttaaccctcttt 49266009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 340
Target Start/End: Complemental strand, 9046420 - 9046387
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaat 340  Q
    ||||||||||||||||||||||||||||| ||||    
T  9046420 tagccaattataaaataacacgtggattactaat 9046387  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 14245797 - 14245841
Alignment:
Q  264 ttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    |||||||||| |||| |||||||||||| |||||||||| |||||    
T  14245797 ttgaacttttatttctaaaaatacccttgattttaaatacaaata 14245841  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 14494661 - 14494697
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaatttt 297  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  14494661 gggttggacttttctttccaaaaatacccttaatttt 14494697  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 262 - 419
Target Start/End: Complemental strand, 44973148 - 44972992
Alignment:
Q  262 ggttgaacttttctttcaaaaaatacccttaattttaaatataaatagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccg 361  Q
    ||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||      ||||||||| ||| ||||||||  ||||||    
T  44973148 ggttggacttttctttctaaaaatacccttaattttaaatacaaatagtcaattataaaataac------attagtaatccatctcactaattttccccg 44973055  T
Q  362 ttaaccctcttttacctctgttatccaaagat---actcacaaaaaacta--acacaacaaaa 419  Q
    |||||||| |||||||||  ||| ||||||||   | |||||||||||||  |||||||||||    
T  44973054 ttaacccttttttacctccattaaccaaagatcaaattcacaaaaaactagcacacaacaaaa 44972992  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 35193507 - 35193434
Alignment:
Q  311 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  35193507 caattataaaataacatgtggattactaatccatgtcactaatcgtccccgttaaccctcttttacctccgtta 35193434  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 307 - 384
Target Start/End: Original strand, 309848 - 309925
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    |||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||| | ||||||||||| ||||    
T  309848 tagccaattataaaataacatgtggattactaatccatgtcactaatcgtccccgttaaacttcttttacctccgtta 309925  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 311 - 464
Target Start/End: Original strand, 7061867 - 7062025
Alignment:
Q  311 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaact 407  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||| ||||||||||||| |||||||| | ||   ||||||||||||||    
T  7061867 caattataaaataacacatggattactaattcatatcactaatcgtcctcgttaa-cctcttttacctccgttatccacatatcaaactcacaaaaaact 7061965  T
Q  408 a--acacaacaaaatttcatgtta-cnnnnnnncaaccgcttttatgttgtacatctgtg 464  Q
    |  ||| |||||||  |||||||| |       |||||| ||||||||||||||||||||    
T  7061966 agcacaaaacaaaaactcatgttacctttttatcaaccgattttatgttgtacatctgtg 7062025  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 43528444 - 43528517
Alignment:
Q  311 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    |||||||||||||||| ||| |||| |||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  43528444 caattataaaataacatgtgaattactaatccatgtcactaatcgtctccgttaaccctcttttacctccgtta 43528517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 44539602 - 44539531
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacct 378  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||| ||| | ||||||| ||||||||||    
T  44539602 tagccaattataaaataacacgtggattactaattcatgtcattaattgtcacagttaaccttcttttacct 44539531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 307 - 384
Target Start/End: Original strand, 13594515 - 13594592
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    |||| ||||||||||||||| |||||||| |||| ||||| |||||||||| || |||||||||||||||||| ||||    
T  13594515 tagctaattataaaataacatgtggattactaatccatgtaactaatcgtctccattaaccctcttttacctccgtta 13594592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 19901656 - 19901609
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  19901656 gggttggacttttctttccaaaaatacccttaattttaaataaaaata 19901609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 25048013 - 25047962
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtcc 358  Q
    ||||||||||||||||||||| ||||||| ||||  ||||||||||||||||    
T  25048013 tagccaattataaaataacacatggattactaatgtatgtcactaatcgtcc 25047962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 44539738 - 44539702
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaatttt 297  Q
    |||||||||||||||||| ||||||||||||||||||    
T  44539738 gggttgaacttttctttccaaaaatacccttaatttt 44539702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 7061734 - 7061781
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    |||||||||||||||||  |||||||||||| |||||||||| |||||    
T  7061734 gggttgaacttttcttttcaaaaatacccttgattttaaatacaaata 7061781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 21956532 - 21956579
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    |||||| ||||||||||  ||||||||||||||||||||||| |||||    
T  21956532 gggttggacttttcttttcaaaaatacccttaattttaaatacaaata 21956579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 8063290 - 8063236
Alignment:
Q  254 cattttcgggttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    |||||| || ||||| ||||||||||||||||||||| |||||| |||| |||||    
T  8063290 catttttggattgaatttttctttcaaaaaataccctcaattttcaatacaaata 8063236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 27339513 - 27339555
Alignment:
Q  326 acgtggattagtaattcatgtcactaatcgtccccgttaaccc 368  Q
    |||||||||| ||||||||||||||||||||| | ||||||||    
T  27339513 acgtggattactaattcatgtcactaatcgtctctgttaaccc 27339555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 43528298 - 43528340
Alignment:
Q  255 attttcgggttgaacttttctttcaaaaaatacccttaatttt 297  Q
    ||||| |||||| ||||||||||| ||||||||||||||||||    
T  43528298 atttttgggttggacttttctttccaaaaatacccttaatttt 43528340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 2221938 - 2221974
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaatttt 297  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  2221938 gggttgaacttttctttccaaaaatacccttattttt 2221974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 309 - 414
Target Start/End: Original strand, 56467 - 56575
Alignment:
Q  309 gccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaa 405  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||||||| ||||| ||| | ||   ||||||||||||    
T  56467 gccaattataaaataacacgtggattattaatccatgtcactaaacgtctccgttaaccctcttttacctttgttaaccacatatcaaactcacaaaaaa 56566  T
Q  406 ctaacacaa 414  Q
    ||| |||||    
T  56567 ctagcacaa 56575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 302
Target Start/End: Original strand, 56333 - 56374
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaata 302  Q
    |||||| ||||||||||| |||||||||||||||| ||||||    
T  56333 gggttggacttttctttccaaaaatacccttaattataaata 56374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 24432233 - 24432302
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttac 376  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  24432233 tagccaattataaaataacatgtggaatactaattcatgtcactaatcgtccccgttaaccctcttttac 24432302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 5592765 - 5592692
Alignment:
Q  311 caattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| | |||| |||| |||||||||||||||    
T  5592765 caattataaaataacacgtggattactaatccatgtcactaatcgttctcgttgacccacttttacctctgtta 5592692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 32889059 - 32889105
Alignment:
Q  262 ggttgaacttttctttcaaaaaatacccttaattttaaatataaata 308  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  32889059 ggttgaacttttctttccaaaaatacccttaattttaaatacaaata 32889105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 297
Target Start/End: Original strand, 26528069 - 26528112
Alignment:
Q  254 cattttcgggttgaacttttctttcaaaaaatacccttaatttt 297  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  26528069 catttttgggttgaacttttctttccaaaaatacccttaatttt 26528112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 32889177 - 32889217
Alignment:
Q  261 gggttgaacttttctttcaaaaaatacccttaattttaaat 301  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  32889177 gggttgaacttttcttttcaaaaatacccttaattttaaat 32889217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 307 - 384
Target Start/End: Complemental strand, 3567 - 3490
Alignment:
Q  307 tagccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgtta 384  Q
    |||| |||||||||||||||||||||||| |||| ||| |||||||||||||  ||||||||||||||||||| ||||    
T  3567 tagctaattataaaataacacgtggattactaatccatatcactaatcgtccatgttaaccctcttttacctccgtta 3490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 430
Target Start/End: Complemental strand, 17305 - 17180
Alignment:
Q  310 ccaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacctctgttatccaaagat---actcacaaaaaac 406  Q
    ||||||||||||||| || ||||||| |||| |||||||||||| ||| |||||||||||||||||  || |||| ||| ||||   || ||||||||||    
T  17305 ccaattataaaataatacatggattactaatccatgtcactaattgtctccgttaaccctcttttagttccgttaaccatagatcaaacacacaaaaaac 17206  T
Q  407 ta--acacaacaaaatttcatgttac 430  Q
    ||  ||| ||||||| ||||||||||    
T  17205 tatcacaaaacaaaaattcatgttac 17180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 48321 - 48376
Alignment:
Q  254 cattttcgggttgaacttttctttcaaaa-aatacccttaattttaaatataaata 308  Q
    |||||| |||||| |||||||||| |||| |||||||||||||||||||| |||||    
T  48321 catttttgggttggacttttcttttaaaaaaatacccttaattttaaatacaaata 48376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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