View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10838_low_20 (Length: 284)

Name: NF10838_low_20
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10838_low_20
NF10838_low_20
[»] chr1 (3 HSPs)
chr1 (53-235)||(16074936-16075117)
chr1 (152-250)||(19198571-19198669)
chr1 (4-250)||(35761858-35762110)
[»] chr4 (2 HSPs)
chr4 (1-250)||(49499198-49499454)
chr4 (1-34)||(28969213-28969246)
[»] chr7 (3 HSPs)
chr7 (1-250)||(21491302-21491560)
chr7 (1-238)||(18367148-18367393)
chr7 (199-240)||(22077977-22078018)
[»] chr6 (5 HSPs)
chr6 (4-250)||(32450071-32450323)
chr6 (176-245)||(26182499-26182566)
chr6 (49-126)||(23260523-23260598)
chr6 (199-250)||(10751413-10751464)
chr6 (49-101)||(25005374-25005426)
[»] chr3 (3 HSPs)
chr3 (49-250)||(16975460-16975672)
chr3 (178-250)||(11937684-11937756)
chr3 (1-98)||(11967862-11967954)
[»] chr5 (1 HSPs)
chr5 (49-126)||(4557914-4557990)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 53 - 235
Target Start/End: Original strand, 16074936 - 16075117
Alignment:
Q  53 tattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaaggattgactttttgttcaagtggaca 152  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||||||||   | || ||||||| ||||||  ||||||||||  |||| ||||| |    
T  16074936 tattgggaaagaagtgttagattttttttataaactaaagaaatgaaaaatatgaaaatgtgagtttcatgaaaatattgacttttgattcatgtggata 16075035  T
Q  153 atgatgtgttaatctctgactgggtttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaata 235  Q
    ||||||||||||||||| |||| ||||| |||||||| ||||||||||||||| |||||| |||||||| |||| ||||||||    
T  16075036 atgatgtgttaatctcttactgtgtttgtctaagtggcgggtattttatttgattatgca-ttgccttaatggcgggttaata 16075117  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 19198669 - 19198571
Alignment:
Q  152 aatgatgtgttaatctctgactgggtttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtg 250  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| || | ||||||||||||| |||| ||||    
T  19198669 aatgatgtgttaatctctgactgtgtttgcctgagtggcgggtattttatttgactatgcatttgccttaatgacgggttaataatatatttctttgtg 19198571  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 35762110 - 35761858
Alignment:
Q  4 gaatgacatttattttattttcctatgcatagatgnnnnnnnnnngtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaat 103  Q
    ||||||||||||||||||||| ||||||||| |||          |||||||||  || ||||||||||| ||||| ||||||| ||| ||||||||| |    
T  35762110 gaatgacatttattttatttttctatgcatatatgttttt-----gtggtattgttaatgaagtgttagactttgtagataaactaaataaatgaaaa-t 35762017  T
Q  104 aaagatatatgagttttatgaaaggattgactttttgttcaagtggacaatgatgtgttaatctctgactgggtttgccta------------agtggag 191  Q
    | ||| ||||| |||||||||||  |||   |||| ||||| |||||  ||||||||||||| | ||||||  ||||||||            |||||      
T  35762016 atagaaatatgtgttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatatttgactgtatttgcctatgagtttgccttagtggca 35761917  T
Q  192 ggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtg 250  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  35761916 ggtattttatttgactatgcatttgccttagtggcgggttaataatatatttctttgtg 35761858  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 49499198 - 49499454
Alignment:
Q  1 gtagaatgacatttattttattttcctatgcatagatgnnnnnnnnnngtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaa 100  Q
    ||||||||||||||||||||||||  |||||||| |||          |||||||||||||||||||||| |||||||||||||||| ||||||||| ||    
T  49499198 gtagaatgacatttattttattttgatatgcatatatgtttttt----gtggtattgggaaagaagtgttggattttgttgataaactaaagaaatg-aa 49499292  T
Q  101 aataaagatatatgagttttatgaaaggattgactttttgttcaagtggacaatgatgtgttaatctctgactgggt------------ttgcctaagtg 188  Q
    |||| ||| |||||||||||||||||  |||   |||| ||||| |||||  |||||||||||||  || | || ||            |||||| ||||    
T  49499293 aatatagaaatatgagttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatacctaattgtgtttgcttatgaggttgccttagtg 49499392  T
Q  189 gagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtg 250  Q
    | |||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  49499393 gcgggtattttatttgactatgcatttgccttagtggcgggttaataatatatttctgtgtg 49499454  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28969246 - 28969213
Alignment:
Q  1 gtagaatgacatttattttattttcctatgcata 34  Q
    |||||||||||||||||||||||| |||||||||    
T  28969246 gtagaatgacatttattttattttgctatgcata 28969213  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 21491560 - 21491302
Alignment:
Q  1 gtagaatgacatttattttattttcctatgcatagatgnnnnnnnnnngtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaa 100  Q
    ||||||||||||||||||||||||  |||||||| |||          |||||||||||||||||||||| |||||||||||||||| ||||||||| ||    
T  21491560 gtagaatgacatttattttattttgatatgcatatatgtttttttt--gtggtattgggaaagaagtgttggattttgttgataaactaaagaaatg-aa 21491464  T
Q  101 aataaagatatatgagttttatgaaaggattgactttttgttcaagtggacaatgatgtgttaatctctgactgggt------------ttgcctaagtg 188  Q
    |||| ||  |||||||||||||||||  |||   |||| ||||| |||||  ||||||||||||| ||| | || ||            |||||| ||||    
T  21491463 aatatagtaatatgagttttatgaaaatatttcattttggttcatgtggatgatgatgtgttaatatcttattgtgtttgcttatgaggttgccttagtg 21491364  T
Q  189 gagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtg 250  Q
    | |||||||||||||||||||||||||||||||||||  ||||||||||||| |||| ||||    
T  21491363 gcgggtattttatttgactatgcatttgccttagtggtgggttaataatatatttctgtgtg 21491302  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 18367393 - 18367148
Alignment:
Q  1 gtagaatgacatttattttattttcctatgcatagatgnnnnnnnnnngtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaa 100  Q
    ||||||||||||||||||||||||  |||||||| |||          |||||||||||||||||||||| |||||||||||||||| ||||||||| ||    
T  18367393 gtagaatgacatttattttattttgatatgcatatatgttttttt---gtggtattgggaaagaagtgttggattttgttgataaactaaagaaatg-aa 18367298  T
Q  101 aataaagatatatgagttttatgaaaggattgactttttgttcaagtggacaatgatgtgttaatctctgactgggt------------ttgcctaagtg 188  Q
    |||| ||| ||||||| ||||| |||  |||   |||| |||||  ||||  |||||||||||||  |||| || ||            |||||| ||||    
T  18367297 aatatagaaatatgagatttataaaaatatttcattttggttcatatggatgatgatgtgttaatacctgattgtgtttggttatgaggttgccttagtg 18367198  T
Q  189 gagggtattttatttgactatgcatttgccttagtggctggttaataata 238  Q
    | |||||||||| ||||||||||||||| ||||| ||| |||||||||||    
T  18367197 gcgggtattttaattgactatgcatttgtcttaggggcgggttaataata 18367148  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 22077977 - 22078018
Alignment:
Q  199 tatttgactatgcatttgccttagtggctggttaataatata 240  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  22077977 tatttgactatgcatttgccttagtggcgggttaataatata 22078018  T

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Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 4 - 250
Target Start/End: Complemental strand, 32450323 - 32450071
Alignment:
Q  4 gaatgacatttattttattttcctatgcatagatgnnnnnnnnnngtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaat 103  Q
    ||||||||||||||||||||| ||||||||| |||          |||||||||  |||||||||||||| ||||||||||||| ||| ||||||||| |    
T  32450323 gaatgacatttattttatttttctatgcatatatgttttt-----gtggtattgttaaagaagtgttagactttgttgataaactaaataaatgaaaa-t 32450230  T
Q  104 aaagatatatgagttttatgaaaggattgactttttgttcaagtggacaatgatgtgttaatctctgactgggtttgccta------------agtggag 191  Q
    | ||| |||||||||||||||||  |||   |||| ||||| ||| |  ||||||||||||| ||||||||  ||||||||            ||| | |    
T  32450229 atagaaatatgagttttatgaaaatatttcattttggttcatgtgcatgatgatgtgttaatatctgactgtatttgcctatgagtttgtcttagtcgtg 32450130  T
Q  192 ggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtg 250  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  32450129 ggtattttatttgactatgcatttgccttagtggcgggttaataatatatttctttgtg 32450071  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 26182566 - 26182499
Alignment:
Q  176 gtttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataatatacttct 245  Q
    |||||||| ||||| ||||||||||||||||||| | |||||||  ||||| ||||||||||||| ||||    
T  26182566 gtttgccttagtggcgggtattttatttgactatacgtttgcct--gtggcgggttaataatatatttct 26182499  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 23260598 - 23260523
Alignment:
Q  49 gtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaa 126  Q
    |||||||||  ||||||||||||||||| | |||||||| ||| ||||||||| || ||| |||||||||||||||||    
T  23260598 gtggtattgttaaagaagtgttagattt-gctgataaactaaataaatgaaaa-tatagaaatatgagttttatgaaa 23260523  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 10751464 - 10751413
Alignment:
Q  199 tatttgactatgcatttgccttagtggctggttaataatatacttctctgtg 250  Q
    |||||| |||||  |||||||||||||||||||||||||||| |||| ||||    
T  10751464 tatttgtctatgagtttgccttagtggctggttaataatatatttctttgtg 10751413  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 25005374 - 25005426
Alignment:
Q  49 gtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaa 101  Q
    |||||||||  |||||||||||||| |||| |||||||| ||| |||||||||    
T  25005374 gtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaa 25005426  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 250
Target Start/End: Original strand, 16975460 - 16975672
Alignment:
Q  49 gtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaaggattgactttttgttcaagtg 148  Q
    |||||||||  |||||||||||||| |||| |||||||| ||| ||||||||| || ||| |||||||||||||||||  |||    ||| ||||| |||    
T  16975460 gtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaa-tatagaaatatgagttttatgaaaatatttcagtttggttcatgtg 16975558  T
Q  149 gacaatgatgtgttaatctctgact------------gggtttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataa 236  Q
    ||  ||||||||||||| | |||||            | |||||||| ||||| ||||||||||||||| ||||| |||||||||||||| |||||||||    
T  16975559 gatgatgatgtgttaatatgtgactatatttgcctatgagtttgccttagtggcgggtattttatttgattatgcgtttgccttagtggcgggttaataa 16975658  T
Q  237 tatacttctctgtg 250  Q
    |||| |||| ||||    
T  16975659 tatatttctttgtg 16975672  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 11937756 - 11937684
Alignment:
Q  178 ttgcctaagtggagggtattttatttgactatgcatttgccttagtggctggttaataatatacttctctgtg 250  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||||| |||| |||||||| |||| ||||    
T  11937756 ttgccttagtggcaggtattttatttgactatgcatttgccttagtggcaggttcataatatatttctgtgtg 11937684  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 11967954 - 11967862
Alignment:
Q  1 gtagaatgacatttattttattttcctatgcatagatgnnnnnnnnnngtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatga 98  Q
    ||||||||||||||||||||||||  |||||||| |||          ||||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  11967954 gtagaatgacatttattttattttgatatgcatatatgttttttt---gtggtattgggaaagaagtgtt--attttgttgataaactaaagaaatga 11967862  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 4557990 - 4557914
Alignment:
Q  49 gtggtattgggaaagaagtgttagattttgttgataaacaaaagaaatgaaaaataaagatatatgagttttatgaaa 126  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||||||| |||||| | | |||||||||||||||||    
T  4557990 gtggtattgagaaagaagtgttggattttgttgataaactaaagaaatg-aaaatatataaatatgagttttatgaaa 4557914  T

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