View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10838_low_22 (Length: 265)

Name: NF10838_low_22
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10838_low_22
NF10838_low_22
[»] chr5 (17 HSPs)
chr5 (15-250)||(9355053-9355289)
chr5 (15-250)||(9307791-9308017)
chr5 (179-250)||(9347625-9347696)
chr5 (142-251)||(9301553-9301662)
chr5 (142-251)||(9356595-9356704)
chr5 (142-251)||(9367811-9367920)
chr5 (62-113)||(9347722-9347773)
chr5 (169-251)||(9288199-9288281)
chr5 (142-251)||(9305171-9305280)
chr5 (142-251)||(9328984-9329093)
chr5 (142-251)||(9373717-9373826)
chr5 (142-251)||(9361033-9361139)
chr5 (142-251)||(9292731-9292840)
chr5 (142-251)||(9297338-9297447)
chr5 (142-248)||(9351703-9351809)
chr5 (167-248)||(9331975-9332056)
chr5 (142-251)||(9349213-9349322)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 9355289 - 9355053
Alignment:
Q  15 ggcaaataagtaccgtattcgctcaaattaaatagtttgccatgtggttctcatcctagcgacattaaagtagaagataagttacaaaatctcaagaatt 114  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9355289 ggcaaataagtaccgtattcgctcaaattaaatagtttgtcatgtggttctcatcctagcgacattaaagtagaagataagttacaaaatctcaagaatt 9355190  T
Q  115 tgacattatgtgatgcgactgatt-attgaaaatgttcaggcactttattctgctcttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagct 213  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  9355189 tgacattatgtgatgcgactgattaagggaaaatgttcaggcactttattctgctcttagaaggagaaaatgggattgaagcaacaaaaaaagtgtagct 9355090  T
Q  214 aaatataacttattctcaatgaagatgaagaagaatg 250  Q
    |||||||||||||||||||||||||||||||||||||    
T  9355089 aaatataacttattctcaatgaagatgaagaagaatg 9355053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 9308017 - 9307791
Alignment:
Q  15 ggcaaataagtaccgtattcgctcaaattaaatagtttgccatgtggttctcatcctagcgacattaaagtagaagataagttacaaaatctcaagaatt 114  Q
    |||||||||||||||||||||| |||||     |||||  |  |||||||||||||||| ||||||||    ||| | ||| ||||||||| ||||||||    
T  9308017 ggcaaataagtaccgtattcgcacaaat-----agtttctctagtggttctcatcctagagacattaa----gaatagaagctacaaaatcgcaagaatt 9307927  T
Q  115 tgacattatgtgatgcgactgattattgaaaatgttcaggcactttattctgctcttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagcta 214  Q
    |||||||||||||||||||||||||  ||||||||||| | |||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  9307926 tgacattatgtgatgcgactgattaaggaaaatgttcaagtactttactctgctcttagaaggataaaatgggattgaagcattgaaaaaagtgtagcta 9307827  T
Q  215 aatataacttattctcaatgaagatgaagaagaatg 250  Q
    |||||||||| |||||| ||||||||||||||||||    
T  9307826 aatataacttcttctcagtgaagatgaagaagaatg 9307791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 9347696 - 9347625
Alignment:
Q  179 gaaaatgggattgaagcatcgaaaaaagtgtagctaaatataacttattctcaatgaagatgaagaagaatg 250  Q
    |||| ||||| | |||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||    
T  9347696 gaaagtgggactcaagcatcgaaaagagtgttgctaaatataacttcttctcaatgaagatgaagaagaatg 9347625  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 9301662 - 9301553
Alignment:
Q  142 gaaaatgttcaggcactttattctgctcttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagctaaatataacttattctcaatgaagatga 241  Q
    |||||||||||  ||||| | ||| ||||||||||||||||  | |||| |||||| ||||||||||||||  ||||||| || ||| ||| ||||||||    
T  9301662 gaaaatgttcaatcacttcactcttctcttagaaggagaaagggagattcaagcattgaaaaaagtgtagcagaatataaatttttcacaaagaagatga 9301563  T
Q  242 agaagaatgt 251  Q
    ||||||||||    
T  9301562 agaagaatgt 9301553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 9356595 - 9356704
Alignment:
Q  142 gaaaatgttcaggcactttattctgctcttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagctaaatataacttattctcaatgaagatga 241  Q
    |||||||||||  ||||| | ||||||||||||||||||||  |||||| |||||||||||  ||||||||  ||||||| || ||| ||| ||||||||    
T  9356595 gaaaatgttcaatcacttcactctgctcttagaaggagaaagggggattcaagcatcgaaactagtgtagccgaatataaattcttcacaaagaagatga 9356694  T
Q  242 agaagaatgt 251  Q
    |||| |||||    
T  9356695 agaaaaatgt 9356704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 9367811 - 9367920
Alignment:
Q  142 gaaaatgttcaggcactttattctgctcttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagctaaatataacttattctcaatgaagatga 241  Q
    |||||||||||  ||||| | ||||||||||||||||||||    |||| |||||| ||||||||||||||  ||||||| || ||| ||| ||||||||    
T  9367811 gaaaatgttcaaacacttcactctgctcttagaaggagaaaggcagattcaagcattgaaaaaagtgtagccgaatataaattcttcacaaagaagatga 9367910  T
Q  242 agaagaatgt 251  Q
    ||||||||||    
T  9367911 agaagaatgt 9367920  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 9347773 - 9347722
Alignment:
Q  62 ttctcatcctagcgacattaaagtagaagataagttacaaaatctcaagaat 113  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  9347773 ttctcatcctagcgacattaaagtagaagagaagctacaaaatctcaagaat 9347722  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 9288281 - 9288199
Alignment:
Q  169 cttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagctaaatataacttattctcaatgaagatgaagaagaatgt 251  Q
    ||||||||||||||  | |||| ||||||||||| |||||||||  ||||||| |||||| ||| ||||||||||||||||||    
T  9288281 cttagaaggagaaagagagattcaagcatcgaaacaagtgtagccgaatataaattattcacaaagaagatgaagaagaatgt 9288199  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 9305280 - 9305171
Alignment:
Q  142 gaaaatgttcaggcactttattctgctcttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagctaaatataacttattctcaatgaagatga 241  Q
    |||||||||||  ||||| | ||| |||||||||||| |||  | |||| |||||| ||||||||||||||  ||||||| || ||| ||| ||||||||    
T  9305280 gaaaatgttcaatcacttcactcttctcttagaaggaaaaagggagattcaagcattgaaaaaagtgtagcagaatataaatttttcacaaagaagatga 9305181  T
Q  242 agaagaatgt 251  Q
    ||||||||||    
T  9305180 agaagaatgt 9305171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 9328984 - 9329093
Alignment:
Q  142 gaaaatgttcaggcactttattctgctcttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagctaaatataacttattctcaatgaagatga 241  Q
    |||||||||||  ||||| | ||| || |||||||||||||| | || | |||||| |||||| |||||||  ||||||| |||||| ||| ||||||||    
T  9328984 gaaaatgttcaatcacttcactcttctattagaaggagaaaaggagaatcaagcattgaaaaatgtgtagcagaatataaattattcacaaagaagatga 9329083  T
Q  242 agaagaatgt 251  Q
    ||||||||||    
T  9329084 agaagaatgt 9329093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 9373717 - 9373826
Alignment:
Q  142 gaaaatgttcaggcactttattctgctcttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagctaaatataacttattctcaatgaagatga 241  Q
    |||||||||||  ||||| | ||| ||||||||||||||||  | |||| |||||| |||| |||||||||  ||||||| || ||| ||| ||||||||    
T  9373717 gaaaatgttcaatcacttcactcttctcttagaaggagaaagggagattcaagcattgaaacaagtgtagccgaatataaattcttcacaaagaagatga 9373816  T
Q  242 agaagaatgt 251  Q
    ||||||||||    
T  9373817 agaagaatgt 9373826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 9361033 - 9361139
Alignment:
Q  142 gaaaatgttcaggcactttattctgctcttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagctaaatataacttattctcaatgaagatga 241  Q
    |||||||||||  ||||| | ||| ||||||||||||||||| | |||| |||||| ||||||||||||||  ||||||| || ||| ||   |||||||    
T  9361033 gaaaatgttcaaacacttcactcttctcttagaaggagaaaaggagattcaagcattgaaaaaagtgtagcagaatataaattcttcaca---aagatga 9361129  T
Q  242 agaagaatgt 251  Q
    ||||||||||    
T  9361130 agaagaatgt 9361139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 9292840 - 9292731
Alignment:
Q  142 gaaaatgttcaggcactttattctgctcttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagctaaatataacttattctcaatgaagatga 241  Q
    |||||||||||  ||||| | ||| ||||||||||||||||  | || | || ||| ||||||||||||||  ||||||| || ||| ||| ||||||||    
T  9292840 gaaaatgttcaatcacttcactcttctcttagaaggagaaagggagaatcaaacattgaaaaaagtgtagccgaatataaattcttcacaaagaagatga 9292741  T
Q  242 agaagaatgt 251  Q
    ||||||||||    
T  9292740 agaagaatgt 9292731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 9297447 - 9297338
Alignment:
Q  142 gaaaatgttcaggcactttattctgctcttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagctaaatataacttattctcaatgaagatga 241  Q
    |||||||||||  ||||| | ||| ||||||||||||||||  | |||| |||||| |||| |||||||||  ||||||| || ||| | | ||||||||    
T  9297447 gaaaatgttcaatcacttcactcttctcttagaaggagaaagggagattcaagcattgaaacaagtgtagccgaatataaatttttcactaagaagatga 9297348  T
Q  242 agaagaatgt 251  Q
    ||||||||||    
T  9297347 agaagaatgt 9297338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 9351809 - 9351703
Alignment:
Q  142 gaaaatgttcaggcactttattctgctcttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagctaaatataacttattctcaatgaagatga 241  Q
    |||||||||||  || || | ||| ||||||||||||||||  | || | |||||| ||||||||||||||  ||||||| || ||| ||| ||||||||    
T  9351809 gaaaatgttcaatcaattcactcttctcttagaaggagaaagggagaatcaagcattgaaaaaagtgtagcagaatataaattcttcacaaagaagatga 9351710  T
Q  242 agaagaa 248  Q
    |||||||    
T  9351709 agaagaa 9351703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 9332056 - 9331975
Alignment:
Q  167 ctcttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagctaaatataacttattctcaatgaagatgaagaagaa 248  Q
    ||||||||||||||||  | || | |||||| ||||||||||||||  ||||||| || ||| ||| |||||||||||||||    
T  9332056 ctcttagaaggagaaagggagaatcaagcattgaaaaaagtgtagcagaatataaattcttcacaaagaagatgaagaagaa 9331975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 9349213 - 9349322
Alignment:
Q  142 gaaaatgttcaggcactttattctgctcttagaaggagaaaatgggattgaagcatcgaaaaaagtgtagctaaatataacttattctcaatgaagatga 241  Q
    |||||||||||  ||||| | ||| ||||||||||||||||  |  | | |||||| ||||||||||||||  ||||||| || ||| | | ||||||||    
T  9349213 gaaaatgttcaatcacttcagtcttctcttagaaggagaaagggaaaatcaagcattgaaaaaagtgtagccgaatataaattcttcacgaagaagatga 9349312  T
Q  242 agaagaatgt 251  Q
    |||| |||||    
T  9349313 agaaaaatgt 9349322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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