View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10838_low_23 (Length: 263)

Name: NF10838_low_23
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10838_low_23
NF10838_low_23
[»] chr1 (3 HSPs)
chr1 (139-245)||(32623190-32623296)
chr1 (1-50)||(32623372-32623421)
chr1 (149-219)||(31412443-31412513)
[»] chr4 (5 HSPs)
chr4 (147-219)||(19987643-19987715)
chr4 (149-219)||(19987939-19988009)
chr4 (149-207)||(41206465-41206523)
chr4 (149-221)||(38978713-38978785)
chr4 (171-221)||(7833803-7833853)
[»] chr8 (4 HSPs)
chr8 (149-219)||(22576660-22576729)
chr8 (149-221)||(21397237-21397309)
chr8 (149-221)||(21791730-21791802)
chr8 (173-221)||(15937858-15937906)
[»] chr7 (6 HSPs)
chr7 (158-224)||(2196756-2196822)
chr7 (173-221)||(2414354-2414402)
chr7 (149-224)||(7734345-7734420)
chr7 (173-221)||(25194012-25194060)
chr7 (173-217)||(2304920-2304964)
chr7 (147-219)||(23071742-23071814)
[»] chr5 (2 HSPs)
chr5 (149-218)||(36975926-36975995)
chr5 (149-219)||(36976219-36976289)
[»] chr6 (1 HSPs)
chr6 (157-206)||(1702223-1702272)
[»] chr2 (1 HSPs)
chr2 (165-221)||(14914473-14914529)


Alignment Details
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 32623296 - 32623190
Alignment:
Q  139 gagagatctttgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacctaatagaataatagtcgatta 238  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  32623296 gagagatctttgttaggtgtcccatgtcgaaaagataaaaatgtttgatatggtatttaagacatgagattctcacacctaatagaataatagtcgatta 32623197  T
Q  239 aggttta 245  Q
    |||||||    
T  32623196 aggttta 32623190  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32623421 - 32623372
Alignment:
Q  1 acttttcatagacgtagctgctttagctaaattatgagctactacgttaa 50  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  32623421 acttttcatagatgtagctgctttaactaaattatgagctactacgttaa 32623372  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 31412513 - 31412443
Alignment:
Q  149 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccaccta 219  Q
    ||||||| ||||||| ||||| |||| |||||| ||||||||||| ||||| | ||||  |||||||||||    
T  31412513 tgttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccgtgaggttctcccaccta 31412443  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 19987643 - 19987715
Alignment:
Q  147 tttgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccaccta 219  Q
    ||||||||| ||||||| ||||| |||| |||||||||||||||||| ||||| ||||||  |||||||||||    
T  19987643 tttgttaggagtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcccaccta 19987715  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 19987939 - 19988009
Alignment:
Q  149 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccaccta 219  Q
    ||||||| ||||||| ||||| |||| |||||| ||||||||||| ||||| ||||||  |||||||||||    
T  19987939 tgttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccatgaggttctcccaccta 19988009  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 41206465 - 41206523
Alignment:
Q  149 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgaga 207  Q
    ||||||| ||||||  ||||| |||||||| |||||||||||||||||||| |||||||    
T  41206465 tgttaggcgtcccatatcgagtagataaaagtgtttgatgtggtatttaagtcatgaga 41206523  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 38978713 - 38978785
Alignment:
Q  149 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 221  Q
    ||||||| ||||||| | ||| |||||||| |||||||||||||| ||||  |||||| |||| |||||||||    
T  38978713 tgttaggagtcccacatggagtagataaaagtgtttgatgtggtacttaaaccatgaggctcttccacctaat 38978785  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 7833853 - 7833803
Alignment:
Q  171 agataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 221  Q
    |||||||| || ||||||||||| ||||| |||||| ||||||||||||||    
T  7833853 agataaaagtgcttgatgtggtacttaagtcatgaggctctcccacctaat 7833803  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 22576729 - 22576660
Alignment:
Q  149 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccaccta 219  Q
    ||||||| ||||||| ||||| ||||||||||| ||||||||||| ||||| |||| ||||||||||||||    
T  22576729 tgttaggagtcccacatcgagtagataaaaatgcttgatgtggtagttaagccatg-gactctcccaccta 22576660  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 21397237 - 21397309
Alignment:
Q  149 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 221  Q
    ||||||| ||||||||||||| |||||||| || ||||||||||||||||  || | | ||||||||||||||    
T  21397237 tgttaggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaat 21397309  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 21791730 - 21791802
Alignment:
Q  149 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 221  Q
    ||||||| ||||||||||||| |||||||| || ||||||||||||||||  || | | ||||||||||||||    
T  21791730 tgttaggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaat 21791802  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 15937906 - 15937858
Alignment:
Q  173 ataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 221  Q
    |||||| || ||||||||||| ||||| |||||| ||||||||||||||    
T  15937906 ataaaattgcttgatgtggtacttaagccatgagtctctcccacctaat 15937858  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 2196756 - 2196822
Alignment:
Q  158 tcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacctaataga 224  Q
    |||||| ||||| ||||||||| | ||||||||||| ||||| ||||||||||| ||||||||||||    
T  2196756 tcccacatcgagtagataaaaaagcttgatgtggtacttaagtcatgagactcttccacctaataga 2196822  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 2414402 - 2414354
Alignment:
Q  173 ataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 221  Q
    |||||| ||||| |||||||||||||| |||||||||||||||||||||    
T  2414402 ataaaattgtttaatgtggtatttaagtcatgagactctcccacctaat 2414354  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 7734420 - 7734345
Alignment:
Q  149 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacctaataga 224  Q
    ||||||| |||| || ||||| ||||||||||| |||||||||||||||||  |||||||  || |||||||||||    
T  7734420 tgttaggagtcctacatcgagtagataaaaatgcttgatgtggtatttaagcaatgagacattctcacctaataga 7734345  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 25194012 - 25194060
Alignment:
Q  173 ataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 221  Q
    ||||||||||||||||||||| ||||| |||||| |||| |||||||||    
T  25194012 ataaaaatgtttgatgtggtacttaagccatgaggctcttccacctaat 25194060  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 2304920 - 2304964
Alignment:
Q  173 ataaaaatgtttgatgtggtatttaagacatgagactctcccacc 217  Q
    |||||| ||||||||||| |||||||| |||||| ||||||||||    
T  2304920 ataaaagtgtttgatgtgatatttaagtcatgaggctctcccacc 2304964  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 23071742 - 23071814
Alignment:
Q  147 tttgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccaccta 219  Q
    ||||||||| ||||| | ||||| |||| |||||||||||||||||| ||||  |||||   |||||||||||    
T  23071742 tttgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtacttaaaccatgaagttctcccaccta 23071814  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 36975926 - 36975995
Alignment:
Q  149 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacct 218  Q
    ||||||| ||||||| ||||| |||| ||| |||||||||||||||||||| ||| || |||||||||||    
T  36975926 tgttaggagtcccacatcgagtagatcaaagtgtttgatgtggtatttaagtcataaggctctcccacct 36975995  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 36976219 - 36976289
Alignment:
Q  149 tgttaggtgtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccaccta 219  Q
    ||||||| ||| ||| ||||| |||| ||| ||||||||||| |||||||| ||  |||||||||||||||    
T  36976219 tgttaggagtctcacatcgagtagatcaaagtgtttgatgtgatatttaagtcacaagactctcccaccta 36976289  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 1702272 - 1702223
Alignment:
Q  157 gtcccacgtcgagaagataaaaatgtttgatgtggtatttaagacatgag 206  Q
    ||||||| ||||| |||| |||||||||||||||||| ||||| ||||||    
T  1702272 gtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgag 1702223  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 14914529 - 14914473
Alignment:
Q  165 tcgagaagataaaaatgtttgatgtggtatttaagacatgagactctcccacctaat 221  Q
    ||||| ||||||||||||| || |||||| ||||| ||||||||| ||| |||||||    
T  14914529 tcgagtagataaaaatgttcgacgtggtacttaagtcatgagactttcctacctaat 14914473  T

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