View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_24 (Length: 258)
Name: NF10838_low_24
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 9569754 - 9569974
Alignment:
| Q |
19 |
agagactacgttattaataaatttttccgttcaannnnnnnnnc-ctttcatcaatatcaaaagaaagtagattaagtaagacctacttgttgctttgta |
117 |
Q |
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| T |
9569754 |
agagactatgttattaataaatttttccgttcaatttttttttttctttcatcaatatcaaaagaaagtagattaagcaagacctacttgttgctttgta |
9569853 |
T |
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| Q |
118 |
tctatctaattgtttttctccatacagatatctaccttagacccttgcatttacaaacttccaactaattgagtcacaaagaaaaggtctttgtgccttt |
217 |
Q |
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| T |
9569854 |
tctatctaattgtttttctccatacagatatctaccttagacccttgcatttacaaacttccaactaattgagtcacaaagaaaaggtctttgtgccttt |
9569953 |
T |
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| Q |
218 |
ccacgttatccatcacaacca |
238 |
Q |
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| T |
9569954 |
ccacgttatccatcacaacca |
9569974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 9772933 - 9773008
Alignment:
| Q |
113 |
ttgtatctatctaattgtttttctccatacagatatctaccttagacccttgcatttacaaacttccaactaattg |
188 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||||| |||| |
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| T |
9772933 |
ttgtatctatctaattgtttttctccatacagacatctatcttagacccttgcatataccaacttccaactcattg |
9773008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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