View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_26 (Length: 251)
Name: NF10838_low_26
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 34694265 - 34694500
Alignment:
| Q |
1 |
cggaatttcgatggggaggaagaagaagcgcgatgcttcaaaggtctggtgttattactgcgatcatgaattcgatgacgagaaaatcttggttcagcat |
100 |
Q |
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| T |
34694265 |
cggaatttcgatggggaggaagaagaagcgcgatgcttcaaaggtctggtgttattac-gcgatcatgaattcgatgacgagaagatcttggttcagcat |
34694363 |
T |
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| Q |
101 |
cagaaagccaagcactttaactgtcatgtttgtcataagaagctttccactgctggtggcatgtctattcacgttcttcaggtccacataaaacgtcacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34694364 |
cagaaagccaagcactttaactgtcatgtttgtcataagaagctttccactgctggtggcatgtctattcacgttcttcaggtccacagaaaacgtcacc |
34694463 |
T |
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| Q |
201 |
aagtatactctcaactatgtctattgcagcctctatc |
237 |
Q |
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| T |
34694464 |
aagtatactctcaactatgtctattgcagcctctatc |
34694500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 26992007 - 26992242
Alignment:
| Q |
1 |
cggaatttcgatggggaggaagaagaagcgcgatgcttcaaaggtctggtgttattactgcgatcatgaattcgatgacgagaaaatcttggttcagcat |
100 |
Q |
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| T |
26992007 |
cggaatttcgatggggaggaagaagaagcgcgatgcttcaaaggtctggtgttattac-gcgatcatgaattcgatgacgagaagatcttggttcagcat |
26992105 |
T |
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| Q |
101 |
cagaaagccaagcactttaactgtcatgtttgtcataagaagctttccactgctggtggcatgtctattcacgttcttcaggtccacataaaacgtcacc |
200 |
Q |
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| T |
26992106 |
cagaaagccaagcactttaactgtcatgtttgtcataagaagctttccactgctggtggcatgtctattcacgttcttcaggtccacagaaaacgtcacc |
26992205 |
T |
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| Q |
201 |
aagtatactctcaactatgtctattgcagcctctatc |
237 |
Q |
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| T |
26992206 |
aagtatactctcaactatgtctattgcagcctctatc |
26992242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 27033006 - 27033034
Alignment:
| Q |
209 |
tctcaactatgtctattgcagcctctatc |
237 |
Q |
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| T |
27033006 |
tctcaactatgtctattgcagcctctatc |
27033034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 44866158 - 44865947
Alignment:
| Q |
3 |
gaatttcgatggggaggaagaagaagcgcgatgcttcaaaggtctggtgttattactgcgatcatgaattcgatgacgagaaaatcttggttcagcatca |
102 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
44866158 |
gaatttcgatggggaggaagaagaagcgcgttgcttcaaaggtatggtgttattactgcgatcgtgaattcgatgacgagaagatcttggttcagcatca |
44866059 |
T |
|
| Q |
103 |
gaaagccaagcactttaactgtcatgtttgtcataagaagctttccactgctggtggcatgtctattcacgttcttcaggtccac--ataaaacgtcacc |
200 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |
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| T |
44866058 |
gaaagccaagcactttaagtgtcacgtttgtcataagaagctttccactgctggtggcatgtccattcacgttcttcaggtccacaaagaaaacgtcacc |
44865959 |
T |
|
| Q |
201 |
aagtatactctc |
212 |
Q |
| |
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||||||| |||| |
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| T |
44865958 |
aagtatattctc |
44865947 |
T |
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