View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10838_low_27 (Length: 251)

Name: NF10838_low_27
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10838_low_27
NF10838_low_27
[»] chr6 (5 HSPs)
chr6 (1-195)||(8101113-8101307)
chr6 (1-89)||(13360316-13360403)
chr6 (1-53)||(7265572-7265624)
chr6 (1-89)||(32978842-32978930)
chr6 (1-89)||(7977773-7977861)
[»] chr3 (4 HSPs)
chr3 (3-84)||(25093532-25093613)
chr3 (1-84)||(3631712-3631795)
chr3 (1-53)||(40993314-40993366)
chr3 (1-47)||(15505775-15505821)
[»] chr7 (6 HSPs)
chr7 (1-89)||(18035808-18035895)
chr7 (2-89)||(20549820-20549907)
chr7 (1-43)||(640141-640183)
chr7 (39-89)||(2334326-2334376)
chr7 (1-89)||(15680837-15680925)
chr7 (1-89)||(33994240-33994328)
[»] chr1 (3 HSPs)
chr1 (1-89)||(16927130-16927216)
chr1 (1-84)||(5898214-5898297)
chr1 (2-53)||(43492473-43492524)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-79)||(90871-90949)
[»] chr4 (3 HSPs)
chr4 (1-53)||(8402721-8402773)
chr4 (1-89)||(4672028-4672116)
chr4 (3-83)||(20950376-20950456)
[»] chr5 (3 HSPs)
chr5 (2-53)||(30502367-30502418)
chr5 (2-53)||(30542710-30542761)
chr5 (1-52)||(32630715-32630766)
[»] chr2 (2 HSPs)
chr2 (1-54)||(20242705-20242758)
chr2 (1-89)||(2438662-2438750)
[»] chr8 (1 HSPs)
chr8 (1-89)||(3025579-3025667)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 8101113 - 8101307
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttcaaagatgttatc 100  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||  ||||||| ||||||||||    
T  8101113 ataatccagtgtaattatatgtgtcagtgtcaaatacaacacatgtccgacatggaaacacgtctagtccaaagaatgtctatggttcatagatgttatc 8101212  T
Q  101 ctttccctcaaatttgtactataacaaaatcannnnnnnacgaatacctaaatattacaaaagaacaaagttatcaaaaagagaggagttaatac 195  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8101213 ctttccctcaaatttgtactataacaaaatcatttttttacgaatacctaaatattacaaaagaacaaagttatcaaaaagagaggagttaatac 8101307  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 13360403 - 13360316
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 89  Q
    |||||||||||||||||||||| |  |||||||| |||||| ||||||||||| || ||||| ||| ||| ||||||||||||| ||||    
T  13360403 ataattcagtgtaattatatgtttcggtgtcagacacaaca-atgtccgacactgagacacgcctaatccgaagagtgtccgtgcttca 13360316  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7265624 - 7265572
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 53  Q
    ||||||||||||||||||||||||  ||||| || |||| |||||||||||||    
T  7265624 ataattcagtgtaattatatgtgtcggtgtcggacacaatacatgtccgacac 7265572  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 32978930 - 32978842
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 89  Q
    |||||| |||||||||| | ||||  ||||| || || ||||||||||||||| |  ||||||||| ||||| ||||||||||| ||||    
T  32978930 ataattaagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 7977861 - 7977773
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 89  Q
    ||||||||||||||||| | ||||  ||||| || |||||| ||||||||||  |||||||| ||| || || |||||| |||| ||||    
T  7977861 ataattcagtgtaattacaagtgtcggtgtcggacacaacatatgtccgacaacgaaacacgcctaatctaaggagtgttcgtgcttca 7977773  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 25093532 - 25093613
Alignment:
Q  3 aattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtg 84  Q
    ||||||||||||||||||||||  ||||| || |||||||||||||||||| ||| ||| |||| ||  |||||||| ||||    
T  25093532 aattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacactgaagcacttctaatctgaagagtgttcgtg 25093613  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 3631712 - 3631795
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtg 84  Q
    |||||||||||||||||||||||  |||||| || || |||||||||||||||    ||||| ||||||| | |||||||||||    
T  3631712 ataattcagtgtaattatatgtgccagtgtcggacacgacacatgtccgacaccaggacacgcctagtccgaggagtgtccgtg 3631795  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 40993366 - 40993314
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 53  Q
    ||||||||||||||||||||||||  ||||| || || |||||||||||||||    
T  40993366 ataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacac 40993314  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15505821 - 15505775
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtc 47  Q
    ||||||||||||||||||| ||||| ||||| || ||||||||||||    
T  15505821 ataattcagtgtaattataagtgttggtgtcggacacaacacatgtc 15505775  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 18035895 - 18035808
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 89  Q
    ||||||||| ||||||| |||||| ||||| |||||  ||||||||| ||||||||| |||||||| ||| | ||||||||||| ||||    
T  18035895 ataattcagcgtaattacatgtgtcagtgtgagataggacacatgtctgacacggaa-cacgtctaatccgaggagtgtccgtgcttca 18035808  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 20549820 - 20549907
Alignment:
Q  2 taattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 89  Q
    |||||||||||||||||||||||  ||||| || |||||||||||||||||  || ||||| ||| ||| | ||||| ||||| ||||    
T  20549820 taattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttca 20549907  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 640141 - 640183
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacaca 43  Q
    ||||||||||||||||||||||||  ||||||||||| |||||    
T  640141 ataattcagtgtaattatatgtgtcggtgtcagatacgacaca 640183  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 2334326 - 2334376
Alignment:
Q  39 acacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 89  Q
    ||||||||||||||| |||||||||||| ||| | ||||||||||| ||||    
T  2334326 acacatgtccgacactgaaacacgtctaatccgaggagtgtccgtgtttca 2334376  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 15680837 - 15680925
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 89  Q
    |||||| |||||||||||| ||||  ||||| || || |||| |||||||||| || ||||||||| | | | ||||||||||| ||||    
T  15680837 ataatttagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttca 15680925  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 33994240 - 33994328
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 89  Q
    ||||||||||| ||||| | ||||  |||||||| || |||||||||| |||| || ||||| ||| ||||| |||||| |||| ||||    
T  33994240 ataattcagtgcaattacaagtgtcggtgtcagacacgacacatgtccaacaccgagacacgcctaatccaaggagtgttcgtgtttca 33994328  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 16927216 - 16927130
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 89  Q
    |||||||||||||||||||| |||| ||||||||||| | |||| |||||||| ||||||||  || ||||||||| ||||||| ||||    
T  16927216 ataattcagtgtaattatatatgttggtgtcagatacga-acatatccgacac-gaaacacgcataatccaaagagcgtccgtgcttca 16927130  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 5898297 - 5898214
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtg 84  Q
    ||||||||||||||||||||| ||  |||||||| || |||| ||||| |||| |  ||||||||| ||| | |||||||||||    
T  5898297 ataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtg 5898214  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 43492524 - 43492473
Alignment:
Q  2 taattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 53  Q
    |||||| |||||||||| |||||  |||||||| ||||||||||||||||||    
T  43492524 taattcggtgtaattatgtgtgtcggtgtcagacacaacacatgtccgacac 43492473  T

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Target: scaffold0022 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 90871 - 90949
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgt 79  Q
    |||||||||||||||||||| |||   ||||||| ||||||| ||||||||||  ||||||| ||| ||||| ||||||    
T  90871 ataattcagtgtaattatatatgtcgatgtcagacacaacacgtgtccgacaccaaaacacgcctaatccaatgagtgt 90949  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 8402773 - 8402721
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 53  Q
    |||||||||||||||||||||| | ||||||||| || |||| ||||||||||    
T  8402773 ataattcagtgtaattatatgtctcagtgtcagacacgacacttgtccgacac 8402721  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 4672116 - 4672028
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 89  Q
    |||||||||||||  |||||||||  ||||| ||||||| || ||| |||||| | |||| ||||| ||||| ||||||| ||| ||||    
T  4672116 ataattcagtgtagctatatgtgtcggtgtcggatacaaaacgtgttcgacactggaacatgtctaatccaaggagtgtctgtgcttca 4672028  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 20950456 - 20950376
Alignment:
Q  3 aattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgt 83  Q
    ||||||||||||||||||||||  |||||||| || | |||||| | |||| ||||||||  || ||||| ||||| ||||    
T  20950456 aattcagtgtaattatatgtgtcggtgtcagacacgatacatgttcaacacagaaacacgcataatccaaggagtgcccgt 20950376  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 30502418 - 30502367
Alignment:
Q  2 taattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 53  Q
    |||||||||||||||||||||||  ||||| || || |||||||||||||||    
T  30502418 taattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacac 30502367  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 30542761 - 30542710
Alignment:
Q  2 taattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacac 53  Q
    |||||||||||||||||||||||  ||||| || || |||||||||||||||    
T  30542761 taattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacac 30542710  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32630766 - 32630715
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgaca 52  Q
    |||||||| ||||||||||||||| |||||| ||||| |||| |||||||||    
T  32630766 ataattcaatgtaattatatgtgtcagtgtcggatacgacacgtgtccgaca 32630715  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20242758 - 20242705
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacg 54  Q
    ||||||||||||||||||||||||  ||||| || ||||||| |||| ||||||    
T  20242758 ataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtctgacacg 20242705  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 2438750 - 2438662
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 89  Q
    ||||||||||||||||| | ||||  ||||| || || ||||||||||||||| |  ||||| ||| ||| | ||||||||||| ||||    
T  2438750 ataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttca 2438662  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3025579 - 3025667
Alignment:
Q  1 ataattcagtgtaattatatgtgttagtgtcagatacaacacatgtccgacacggaaacacgtctagtccaaagagtgtccgtggttca 89  Q
    ||||||||||||||||||| |||| |||||| || || |||| |||| ||||| |  ||||| ||| ||| | ||||||||||| ||||    
T  3025579 ataattcagtgtaattataggtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttca 3025667  T

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