View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_29 (Length: 250)
Name: NF10838_low_29
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_29 |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 42046014 - 42046243
Alignment:
| Q |
7 |
gtgagaagaaaaagctgcatcaaatgacccattttcaaagattgtgccacaaaaagatgaaaaacctttaatgctcttgatactcgaaacaagacggttg |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42046014 |
gtgagaagaaaaagctgcatcaaatgacccattttcaaagattgtgccacagaaagatgaaaaacctttaatgctcttgatactcgaaacaagacggttg |
42046113 |
T |
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| Q |
107 |
attccatatagtctatacgagcatattggtctcctttgaataagtaagcttctttgcccttagttgacctatatgcggcgtcatttccgctttcaaacac |
206 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42046114 |
attccata--gtctatacgagcatattggtctcctttaaataagtaagcttctttgcccttagttgacctatatgcggcgtctattccgctttcaaacac |
42046211 |
T |
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| Q |
207 |
cgttcctttgaaaaaaggaaacacgtcagcaa |
238 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42046212 |
cgttcctttgaaaaaaggaaacacgtcagcaa |
42046243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 3352579 - 3352351
Alignment:
| Q |
8 |
tgagaagaaaaagctgcatcaaatgacccattttcaaagattgtgccacaaaaagatgaaaaacctt---taatgctcttgatactcgaaacaagacggt |
104 |
Q |
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||||||| |||||||||||||| | |||||||||||||||||||||| ||| | ||| || | ||||| |||||||||| ||| ||||||| |
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| T |
3352579 |
tgagaagcaaaagctgcatcaatt---ccattttcaaagattgtgccacggaaacacataaacccgtcgataatgttcttgatactttgaaccagacggt |
3352483 |
T |
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| Q |
105 |
tgattccatatagtctatacgagcatattggtctcctttgaataagtaagcttctttgcccttagttgacctatatgcggcgtcatttccgctttcaaac |
204 |
Q |
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| T |
3352482 |
tggttccataa--tctatacgagcatacttgtctcctttgaataagtaaacttatttgcccttagttgacctaaatgcagcatctactcccttttcaaac |
3352385 |
T |
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| Q |
205 |
accgttcctttgaaaaaaggaaacacgtcagcaa |
238 |
Q |
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| T |
3352384 |
atggttcctttgaaaaaaggaaacatgtcagcaa |
3352351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 235
Target Start/End: Original strand, 42471310 - 42471427
Alignment:
| Q |
118 |
tctatacgagcatattggtctcctttgaataagtaagcttctttgcccttagttgacctatatgcggcgtcatttccgctttcaaacaccgttcctttga |
217 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||| | | |||||||| | || || || ||||| |||||||||| || ||||||| |
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| T |
42471310 |
tctatacgagcatacttgtctcctttgaataagtaagcttctttgtctgtggttgacctgaacgcagcatcgattccgttttcaaacacggtccctttga |
42471409 |
T |
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| Q |
218 |
aaaaaggaaacacgtcag |
235 |
Q |
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|||||||||||| ||||| |
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| T |
42471410 |
aaaaaggaaacatgtcag |
42471427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 14452756 - 14452632
Alignment:
| Q |
114 |
atagtctatacgagcatattggtctcctttgaataagtaagcttctttgcccttagttgacctatatgcggcgtcatttccgctttcaaacaccgttcct |
213 |
Q |
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|||||||||||||||||| | ||||||||||||||||| | ||||||||||| |||||| || ||| ||||| |||| |||| || || |||||| |
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| T |
14452756 |
atagtctatacgagcatacttgtctcctttgaataagtgaacttctttgcccacagttgatcttactgcagcgtctattccattttcgaatacggttcct |
14452657 |
T |
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| Q |
214 |
ttgaaaaaaggaaacacgtcagcaa |
238 |
Q |
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|||||||||||||||| ||| |||| |
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| T |
14452656 |
ttgaaaaaaggaaacatgtcggcaa |
14452632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 63309 - 63424
Alignment:
| Q |
114 |
atagtctatacgagcatattggtctcctttgaataagtaagcttctttgcccttagttgacctatatgcggcgtcatttccgctttcaaacaccgttcct |
213 |
Q |
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|||||||||||||||||| | ||||||| |||| |||||| | |||||| | ||||||||| |||||||||| |||| |||||| |||||||| |
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| T |
63309 |
atagtctatacgagcatacttgtctcctctgaacaagtaaacctctttgttcaaagttgacctgaatgcggcgtctattccatgttcaaaacccgttcct |
63408 |
T |
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| Q |
214 |
ttgaaaaaaggaaaca |
229 |
Q |
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| T |
63409 |
tctaaaaaaggaaaca |
63424 |
T |
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