View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_3 (Length: 446)
Name: NF10838_low_3
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 443
Target Start/End: Original strand, 23785176 - 23785597
Alignment:
| Q |
17 |
acaaaattcatcagaaagaatcgatcatgagaccttgacgtagaacacacttcaatgtcccaagccatcttgacattgcataatatatacggggttgaga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23785176 |
acaaaattcatcagaaagaatcgatcatgagaccttgacgtagaacacacttcaatgtcccaagccatcttgacattgcataatatatacggggttaaga |
23785275 |
T |
|
| Q |
117 |
ttcgaactccaaacaccccacttattcacttaatgataaatttttagccactaaactacttgacc-taaaacgagataaaagtcgaaaatcttagtaaaa |
215 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
23785276 |
ttcgaactccagacaccccacttattcacttaatgataaatttttagccactaaactacttgaccaaaaaaagagataaaagtcgaaaatcttagtaaaa |
23785375 |
T |
|
| Q |
216 |
acagtcaataaactttgacagacaaacaaattagtgatagattttctctatcacttcaaatcaatatcaatattgtagtagtaagattgagtttgnnnnn |
315 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23785376 |
acagtcaataaactttgacagacaaacaaatcagtgatagattttctctatcacttcaa------atcaatattgtagtagtaagattgagtttgaaaaa |
23785469 |
T |
|
| Q |
316 |
nnnnnnntaccatgagtttgaacagcgtgatgaatgtaaggagcaacacgtggtgcaatatcatcagatagattcatgggtttggattgaactttctttt |
415 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23785470 |
agaaaaataccatgagtttgaacagcatgatgaatgtaaggagcgacacgtggcgcaatatcatcagatagattcatgggtttggattgaactttctttt |
23785569 |
T |
|
| Q |
416 |
gcatcacaaaataatcctttgcttctcc |
443 |
Q |
| |
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|||||||||||||||||||||| ||||| |
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| T |
23785570 |
gcatcacaaaataatcctttgcatctcc |
23785597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 152 - 443
Target Start/End: Complemental strand, 23795617 - 23795330
Alignment:
| Q |
152 |
ataaatttttagccactaaactacttgacctaaaac-gagataaaagtcgaaaatctt-agtaaaaacagtcaataaactttgacagacaaacaaattag |
249 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
23795617 |
ataaatttttagccactaaactacttgaccaaaaaaagagataaaagtcgaaaatctttagtaaaaacagtcaataaactttgacagacaaccaaattag |
23795518 |
T |
|
| Q |
250 |
tgatagattttctctatcacttcaaatcaatatcaatattgtagtagtaagattgagtttgnnnnnnnnnnnntaccatgagtttgaacagcgtgatgaa |
349 |
Q |
| |
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|||||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23795517 |
tgatagattttctctatcgcgtcaaatca------atattgtagtagtaagattgagtttgaaaaaagaaaaataccatgagtttgaacagcgtgatgaa |
23795424 |
T |
|
| Q |
350 |
tgtaaggagcaacacgtggtgcaatatcatcagatagattcatgggtttggattgaactttcttttgcatcacaaaataatcctttgcttctcc |
443 |
Q |
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|||||||||| |||||||| ||||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23795423 |
tgtaaggagcgacacgtggcgcaatatcatccgaaaaaatcatgggtttggattgaactttcttttgcatcacaaaataatcctttgcatctcc |
23795330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 152 - 443
Target Start/End: Complemental strand, 23766422 - 23766135
Alignment:
| Q |
152 |
ataaatttttagccactaaactacttgacctaaaacg-agataaaagtcgaaaatctt-agtaaaaacagtcaataaactttgacagacaaacaaattag |
249 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23766422 |
ataaatttttagccactaaactacttgatcaaaaaaatagataaaagtcgaaaatctttagtaaaaacagtcaataaactttgacagacaaacaaattag |
23766323 |
T |
|
| Q |
250 |
tgatagattttctctatcacttcaaatcaatatcaatattgtagtagtaagattgagtttgnnnnnnnnnnnntaccatgagtttgaacagcgtgatgaa |
349 |
Q |
| |
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|||||| ||||||||||| | |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| || |||| |
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| T |
23766322 |
tgataggttttctctatcgcgtcaaatcaatat------tgtagtagtaagattgagtttgaaaaaagaaaaataccatgagtttgaacagcatggtgaa |
23766229 |
T |
|
| Q |
350 |
tgtaaggagcaacacgtggtgcaatatcatcagatagattcatgggtttggattgaactttcttttgcatcacaaaataatcctttgcttctcc |
443 |
Q |
| |
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|||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
23766228 |
tgtaaggagcgacacgtggcgcaatatcatccgacagattcatgggtttggattgaactttcttttgcattacaaaataatcctttgcatctcc |
23766135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 15276036 - 15275998
Alignment:
| Q |
107 |
ggggttgagattcgaactccaaacaccccacttattcac |
145 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||||||| |
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| T |
15276036 |
ggggttgaggttcgaaccccaaacaccccacttattcac |
15275998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 22355126 - 22355164
Alignment:
| Q |
107 |
ggggttgagattcgaactccaaacaccccacttattcac |
145 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| |
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| T |
22355126 |
ggggttgagtttcgaactccagacaccccacttattcac |
22355164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 34107317 - 34107355
Alignment:
| Q |
107 |
ggggttgagattcgaactccaaacaccccacttattcac |
145 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
34107317 |
ggggttgaggttcgaactccagacaccccacttattcac |
34107355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 44187757 - 44187827
Alignment:
| Q |
117 |
ttcgaactccaaacaccccacttattcacttaatga-taaatttttagccactaaactacttgacctaaaa |
186 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| | | | ||||||||||||||||||||| ||||| |||| |
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|
| T |
44187757 |
ttcgaaccccagacaccccacttattcactttaaaagtgaatttttagccactaaactacctgaccaaaaa |
44187827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 15187409 - 15187372
Alignment:
| Q |
108 |
gggttgagattcgaactccaaacaccccacttattcac |
145 |
Q |
| |
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|||||| | ||||||||||||||||||||||||||||| |
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|
| T |
15187409 |
gggttggggttcgaactccaaacaccccacttattcac |
15187372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 37240116 - 37240023
Alignment:
| Q |
88 |
gacattgcataatatatac-ggggttgagattcgaactccaaacaccccacttattc-acttaatgata-aatttttagccactaaactacttg |
178 |
Q |
| |
|
||||||||||||||||||| ||||||| | || |||| |||||| |||||||||||| ||||| | | ||||||||||||||| |||||||| |
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|
| T |
37240116 |
gacattgcataatatatacaggggttggggttggaaccccaaacgccccacttattctccttaaaaagagaatttttagccactagactacttg |
37240023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 3350835 - 3350786
Alignment:
| Q |
86 |
ttgacattgcataatatata-cggggttgagattcgaactccaaacaccc |
134 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||| |||||||||| |
|
|
| T |
3350835 |
ttgacattgcataatatatatcggggttgaagttcgaaccccaaacaccc |
3350786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 26004655 - 26004700
Alignment:
| Q |
88 |
gacattgcataatatatacggggttgagattcgaactccaaacacc |
133 |
Q |
| |
|
|||| |||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
26004655 |
gacagtgcataatatatgcaaggttgagattcgaactccaaacacc |
26004700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 26365473 - 26365533
Alignment:
| Q |
88 |
gacattgcataatatatac-ggggttgagattcgaactccaaacaccccacttattcactt |
147 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||| |
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|
| T |
26365473 |
gacattgcataatatatgtaggggttgatgttcgaactccagacatcccacttattcactt |
26365533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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