View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10838_low_32 (Length: 241)
Name: NF10838_low_32
Description: NF10838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10838_low_32 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42046250 - 42046472
Alignment:
| Q |
1 |
taggaccggagattaatttgtcgttgcaagagtatggagcatagtctattagagcacaaaatttttcatgaaagatgaatgcctggttgttatcggtgtc |
100 |
Q |
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| T |
42046250 |
taggaccggagattaatttgtcgttgcaagagtatggagcatagtctattagagcacaaaaattttcatgaaagatgaatgcctggttgttatcggtgtc |
42046349 |
T |
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| Q |
101 |
aaatgcacaatcaattgcatagctttgaaatattgtaggagcaagtgatttaaacccatcactaacgagagatggcccatgcaaaatcttatcgttggtg |
200 |
Q |
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| T |
42046350 |
aaatgcacaatcaattgcatagctttgaaatattgtaggagcaagtgatttaaacccatcactaacaagagatggcccatgcaaaatcttatcgttggtg |
42046449 |
T |
|
| Q |
201 |
gttccaggagcataatccaatag |
223 |
Q |
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| T |
42046450 |
gttccaggagcataatccaatag |
42046472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 3352336 - 3352122
Alignment:
| Q |
9 |
gagattaatttgtcgttgcaagagtatggagcatagtctattagagcacaaaatttttcatgaaagatgaatgcctggttgttatcggtgtcaaatgcac |
108 |
Q |
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||||||| |||| |||||| |||||||| ||||||||||| ||||||||||| ||||||| |||||||||||| | |||||||||||||| ||| | || |
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| T |
3352336 |
gagattattttgacgttgcccgagtatggtgcatagtctatgagagcacaaaagttttcataaaagatgaatgcttcgttgttatcggtgttaaaggaac |
3352237 |
T |
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| Q |
109 |
aatcaattgcatagctttgaaatattgtaggagcaagtgatttaaacccatcactaacgagagatggcccatgcaaaatcttatcgttggtggttccagg |
208 |
Q |
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| T |
3352236 |
aatctattccatagcttccaaatatggtatgagcaagtgatctaaacccatcgcgaacaagactcggcccatacaaaatcttatcgttgccagttcccgg |
3352137 |
T |
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| Q |
209 |
agcataatccaatag |
223 |
Q |
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| T |
3352136 |
tgcatagtccaatag |
3352122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 14452625 - 14452464
Alignment:
| Q |
1 |
taggaccggagattaatttgtcgttgcaagagtatggagcatagtctattagagcacaaaatttttcatgaaagatgaatgcctggttgttatcggtgtc |
100 |
Q |
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||||||| | ||||| |||||| ||| |||| ||| ||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||| |
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| T |
14452625 |
taggaccagtgattattttgtctttgtcggagtgtggtgcatagtctatgagagcacaaaaattttcataaaagatgaatgcctcgttgttatcggtgtc |
14452526 |
T |
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| Q |
101 |
aaatgcacaatcaattgcatagctttgaaatattgtaggagcaagtgatttaaacccatcac |
162 |
Q |
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| T |
14452525 |
aaaggcacaatcaattccatagcttccaaatattgtatgagcatgtgatttaaaaccatcac |
14452464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 36 - 224
Target Start/End: Original strand, 42471472 - 42471660
Alignment:
| Q |
36 |
ggagcatagtctattagagcacaaaatttttcatgaaagatgaatgcctggttgttatcggtgtcaaatgcacaatcaattgcatagctttgaaatattg |
135 |
Q |
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|||||||||||||| |||||||||| ||||||| ||| |||||||||| | ||||||| |||||||| |||||||||||| |||||||| ||||| | |
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| T |
42471472 |
ggagcatagtctatgagagcacaaaggttttcataaaatatgaatgcctaggtgttatccgtgtcaaaggcacaatcaattccatagcttccaaatacgg |
42471571 |
T |
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| Q |
136 |
taggagcaagtgatttaaacccatcactaacgagagatggcccatgcaaaatcttatcgttggtggttccaggagcataatccaatagt |
224 |
Q |
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| T |
42471572 |
tatgagcaagtgaacggaacccatcacgaacaaattcaggtccgttcaaaacctcatcgttgggggttcccggagcataatccaatagt |
42471660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 63622 - 63662
Alignment:
| Q |
183 |
aaaatcttatcgttggtggttccaggagcataatccaatag |
223 |
Q |
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| T |
63622 |
aaaatcttatcgttgctggttccgggagcataatccaatag |
63662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 37560 - 37603
Alignment:
| Q |
177 |
ccatgcaaaatcttatcgttggtggttccaggagcataatccaa |
220 |
Q |
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| T |
37560 |
ccatgtaaaatcttatcgttgctggttccgggagcataatccaa |
37603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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